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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14026 and 14027 are separated by 111 nucleotides
14027 and 14028 are separated by 146 nucleotides
14028 and 14029 are separated by 529 nucleotides
14029 and 14030 are separated by 264 nucleotides
mRNA_5658: 14026 - SUPERFAMILY--SSF52047, at 619,237 to 620,685
14026
mRNA_5659: 14027 - KOG2422 Uncharacterized conserved protein, at 620,797 to 623,499
14027
mRNA_5660: 14028 - Hypothetical Protein, at 623,646 to 625,624
14028
mRNA_5661: 14029 - K15151 MED10, NUT2 mediator of RNA polymerase II transcription subunit 10, at 626,154 to 626,959
14029
mRNA_5662: 14030 - Hypothetical Protein, at 627,224 to 629,083
14030
Group
Condition
mRNA
_5658
mRNA
_5659
mRNA
_5660
mRNA
_5661
mRNA
_5662
14026
14027
14028
14029
14030
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-1.3
-2.4
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
-0.2
-0.6
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.6
-0.5
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.9
+0.1
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.0
-0.2
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
+0.2
-0.8
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-1.1
-0.1
N.D.
+0.3
growth on oleic acid
YNB Glucose
+0.0
-0.1
-0.1
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.0
-0.3
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.0
-0.1
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.5
+0.2
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.2
-0.5
N.D.
+0.1
auxotrophy
Dropout Complete
+0.1
-0.0
-0.0
N.D.
+0.0
auxotrophy
YNB Glucose
+0.3
-0.3
-0.0
N.D.
+0.1
growth on ypd
YPD
+0.3
+0.1
-0.2
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.5
-0.2
-0.3
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
+0.2
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.1
-0.4
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
+0.1
+0.3
+0.0
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.2
+0.4
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
+0.8
N.D.
-0.1
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