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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14030 and 14031 are separated by 389 nucleotides
14031 and 14032 are separated by 112 nucleotides
14032 and 14033 are separated by 1489 nucleotides
14033 and 14034 are separated by 386 nucleotides
mRNA_5662: 14030 - Hypothetical Protein, at 627,224 to 629,083
14030
mRNA_5663: 14031 - K15441 TAD2, ADAT2 tRNA-specific adenosine deaminase 2, at 629,473 to 630,402
14031
mRNA_5664: 14032 - K01262 pepP Xaa-Pro aminopeptidase, at 630,515 to 632,715
14032
mRNA_5665: 14033 - K15083 RAD16 DNA repair protein RAD16, at 634,205 to 636,873
14033
mRNA_5666: 14034 - Hypothetical Protein, at 637,260 to 638,584
14034
Group
Condition
mRNA
_5662
mRNA
_5663
mRNA
_5664
mRNA
_5665
mRNA
_5666
14030
14031
14032
14033
14034
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
N.D.
-1.4
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
-1.0
-0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
N.D.
-1.3
+0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
+0.4
-0.5
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
N.D.
-0.6
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
-0.3
-0.2
+0.2
growth on ypd
YPD
-0.1
N.D.
-0.1
-0.3
+0.2
growth on oleic acid
YNB Oleic Acid
-0.0
N.D.
-0.2
-0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
-0.0
-0.1
-0.2
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
-0.1
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
-0.0
+0.1
+0.1
growth on oleic acid
YNB Glucose
-0.3
N.D.
+0.1
-0.1
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
+0.5
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
+0.2
-0.2
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
+0.0
-0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
+0.2
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.5
-0.0
-0.1
auxotrophy
YNB Glucose
+0.1
N.D.
+0.4
-0.2
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
+0.7
+0.0
-0.1
auxotrophy
Dropout Complete
+0.0
N.D.
+0.7
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
+0.2
+0.0
+0.1
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