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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14032 and 14033 are separated by 1489 nucleotides
14033 and 14034 are separated by 386 nucleotides
14034 and 14035 are separated by 4208 nucleotides
14035 and 14036 are separated by 193 nucleotides
mRNA_5664: 14032 - K01262 pepP Xaa-Pro aminopeptidase, at 630,515 to 632,715
14032
mRNA_5665: 14033 - K15083 RAD16 DNA repair protein RAD16, at 634,205 to 636,873
14033
mRNA_5666: 14034 - Hypothetical Protein, at 637,260 to 638,584
14034
mRNA_5667: 14035 - K11233 SSK1 osomolarity two-component system, response regulator SSK1, at 642,793 to 648,199
14035
mRNA_5668: 14036 - K01227 E3.2.1.96 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase, at 648,393 to 650,754
14036
Group
Condition
mRNA
_5664
mRNA
_5665
mRNA
_5666
mRNA
_5667
mRNA
_5668
14032
14033
14034
14035
14036
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
-0.1
-0.2
-0.6
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-1.4
+0.1
+0.1
-0.5
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-1.3
+0.1
-0.2
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-0.1
+0.1
-0.0
-0.5
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
-0.0
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.2
+0.2
-0.3
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.2
+0.2
-0.4
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.1
-0.2
-0.1
-0.3
auxotrophy
Dropout Complete
+0.7
+0.0
-0.1
-1.3
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.2
+0.0
-0.6
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.1
+0.1
-0.5
-0.2
growth on oleic acid
YNB Oleic Acid
-0.2
-0.2
+0.1
-0.3
+0.1
auxotrophy
YNB Glucose
+0.4
-0.2
+0.3
-0.7
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.0
+0.1
-0.6
-0.0
growth on ypd
YPD
-0.1
-0.3
+0.2
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.0
-0.1
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
-0.2
-0.0
-0.0
growth on oleic acid
YNB Glucose
+0.1
-0.1
+0.4
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.1
-0.3
+0.5
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.5
-0.4
+1.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.7
+0.0
-0.1
+0.3
+0.0
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