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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14034 and 14035 are separated by 4208 nucleotides
14035 and 14036 are separated by 193 nucleotides
14036 and 14037 are separated by 360 nucleotides
14037 and 14038 are separated by 396 nucleotides
mRNA_5666: 14034 - Hypothetical Protein, at 637,260 to 638,584
14034
mRNA_5667: 14035 - K11233 SSK1 osomolarity two-component system, response regulator SSK1, at 642,793 to 648,199
14035
mRNA_5668: 14036 - K01227 E3.2.1.96 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase, at 648,393 to 650,754
14036
mRNA_5669: 14037 - K01736 aroC chorismate synthase, at 651,115 to 652,658
14037
mRNA_5670: 14038 - K18995 DHX29 ATP-dependent RNA helicase DHX29, at 653,055 to 658,546
14038
Group
Condition
mRNA
_5666
mRNA
_5667
mRNA
_5668
mRNA
_5669
mRNA
_5670
14034
14035
14036
14037
14038
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.6
-0.6
N.D.
+0.1
auxotrophy
Dropout Complete
-0.1
-1.3
-0.1
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.5
-0.4
N.D.
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
-0.3
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
-0.0
-0.3
-0.4
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.5
-0.2
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
-0.1
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.6
-0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.6
-0.0
N.D.
-0.1
auxotrophy
YNB Glucose
+0.3
-0.7
-0.2
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.4
-0.4
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.3
-0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.1
-0.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.0
-0.5
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
-0.0
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.3
+0.1
N.D.
+0.1
growth on ypd
YPD
+0.2
+0.2
-0.0
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.5
-0.0
N.D.
+0.1
growth on oleic acid
YNB Glucose
+0.4
-0.2
+0.2
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.3
+0.0
N.D.
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+1.2
+0.1
N.D.
-0.0
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