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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14037 and 14038 are separated by 396 nucleotides
14038 and 14039 are separated by 853 nucleotides
14039 and 14040 are separated by 163 nucleotides
14040 and 14041 are separated by 777 nucleotides
mRNA_5669: 14037 - K01736 aroC chorismate synthase, at 651,115 to 652,658
14037
mRNA_5670: 14038 - K18995 DHX29 ATP-dependent RNA helicase DHX29, at 653,055 to 658,546
14038
mRNA_5671: 14039 - K11675 IES1 Ino eighty subunit 1, at 659,400 to 661,417
14039
mRNA_5672: 14040 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 661,581 to 662,502
14040
mRNA_5673: 14041 - Hypothetical Protein, at 663,280 to 665,489
14041
Group
Condition
mRNA
_5669
mRNA
_5670
mRNA
_5671
mRNA
_5672
mRNA
_5673
14037
14038
14039
14040
14041
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.5
-0.2
N.D.
-0.0
auxotrophy
Dropout Complete
N.D.
+0.1
-0.7
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
-0.4
N.D.
-0.1
auxotrophy
YNB Glucose
N.D.
-0.0
-0.6
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.4
+0.0
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
-0.1
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
-0.6
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.3
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.0
N.D.
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
-0.2
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
+0.1
N.D.
+0.0
growth on oleic acid
YNB Glucose
N.D.
+0.0
+0.2
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
+0.1
N.D.
+0.2
growth on ypd
YPD
N.D.
-0.1
+0.0
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
-0.1
N.D.
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.1
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.5
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.3
+0.6
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+1.0
N.D.
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.0
+0.9
N.D.
+0.8
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