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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14039 and 14040 are separated by 163 nucleotides
14040 and 14041 are separated by 777 nucleotides
14041 and 14042 are separated by 690 nucleotides
14042 and 14043 are separated by 199 nucleotides
mRNA_5671: 14039 - K11675 IES1 Ino eighty subunit 1, at 659,400 to 661,417
14039
mRNA_5672: 14040 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 661,581 to 662,502
14040
mRNA_5673: 14041 - Hypothetical Protein, at 663,280 to 665,489
14041
mRNA_5674: 14042 - K14560 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3, at 666,180 to 667,115
14042
mRNA_5675: 14043 - Hypothetical Protein, at 667,315 to 670,414
14043
Group
Condition
mRNA
_5671
mRNA
_5672
mRNA
_5673
mRNA
_5674
mRNA
_5675
14039
14040
14041
14042
14043
auxotrophy
YNB Glucose 75mM Methionine
-0.4
N.D.
-0.1
N.D.
-0.1
auxotrophy
Dropout Complete
-0.7
N.D.
-0.1
N.D.
+0.3
auxotrophy
YNB Glucose
-0.6
N.D.
+0.0
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
+0.0
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
+0.0
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
-0.2
N.D.
+0.1
growth on oleic acid
YNB Glucose
+0.2
N.D.
-0.3
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
N.D.
+0.2
N.D.
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
N.D.
-0.1
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
-0.3
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
+0.3
N.D.
-0.1
growth on ypd
YPD
+0.0
N.D.
+0.2
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
-0.0
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.1
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
+0.0
N.D.
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
+0.2
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.5
N.D.
-0.1
N.D.
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.6
N.D.
+0.1
N.D.
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.9
N.D.
+0.8
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.0
N.D.
+0.3
N.D.
+0.3
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