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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14040 and 14041 are separated by 777 nucleotides
14041 and 14042 are separated by 690 nucleotides
14042 and 14043 are separated by 199 nucleotides
14043 and 14044 are separated by 43 nucleotides
mRNA_5672: 14040 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 661,581 to 662,502
14040
mRNA_5673: 14041 - Hypothetical Protein, at 663,280 to 665,489
14041
mRNA_5674: 14042 - K14560 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3, at 666,180 to 667,115
14042
mRNA_5675: 14043 - Hypothetical Protein, at 667,315 to 670,414
14043
mRNA_5676: 14044 - BLAST putative protein 27 [Rhizopogon vesiculosus], at 670,458 to 672,345
14044
Group
Condition
mRNA
_5672
mRNA
_5673
mRNA
_5674
mRNA
_5675
mRNA
_5676
14040
14041
14042
14043
14044
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
N.D.
+0.3
-1.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
N.D.
+0.0
-0.5
growth on oleic acid
YNB Glucose
N.D.
-0.3
N.D.
-0.1
-0.1
growth on ypd
YPD
N.D.
+0.2
N.D.
-0.1
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.0
N.D.
+0.3
-0.5
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
N.D.
+0.4
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.0
N.D.
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
N.D.
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
N.D.
+0.3
-0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.0
N.D.
+0.0
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
N.D.
+0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.0
N.D.
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
N.D.
+0.2
+0.2
auxotrophy
Dropout Complete
N.D.
-0.1
N.D.
+0.3
+0.3
auxotrophy
YNB Glucose
N.D.
+0.0
N.D.
+0.2
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
N.D.
+0.4
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
N.D.
+0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
N.D.
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
N.D.
-0.1
+0.7
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
N.D.
+0.3
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.8
N.D.
-0.1
+0.7
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