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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14042 and 14043 are separated by 199 nucleotides
14043 and 14044 are separated by 43 nucleotides
14044 and 14045 are separated by 149 nucleotides
14045 and 14046 are separated by 547 nucleotides
mRNA_5674: 14042 - K14560 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3, at 666,180 to 667,115
14042
mRNA_5675: 14043 - Hypothetical Protein, at 667,315 to 670,414
14043
mRNA_5676: 14044 - BLAST putative protein 27 [Rhizopogon vesiculosus], at 670,458 to 672,345
14044
mRNA_5677: 14045 - K15901 CGI121, TPRKB EKC/KEOPS complex subunit CGI121/TPRKB, at 672,495 to 673,304
14045
mRNA_5678: 14046 - K06005 SAP candidapepsin, at 673,852 to 675,422
14046
Group
Condition
mRNA
_5674
mRNA
_5675
mRNA
_5676
mRNA
_5677
mRNA
_5678
14042
14043
14044
14045
14046
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.3
-1.3
-0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
-0.5
-0.5
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
+0.2
-0.1
-0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.0
+0.1
-0.0
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.0
-0.5
+0.1
+0.1
growth on ypd
YPD
N.D.
-0.1
-0.4
-0.0
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
+0.0
-0.1
-0.1
auxotrophy
YNB Glucose
N.D.
+0.2
+0.3
-0.4
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
+0.2
-0.3
-0.2
growth on oleic acid
YNB Glucose
N.D.
-0.1
-0.1
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
+0.3
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
+0.2
-0.4
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
+0.3
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
-0.5
-0.1
+0.4
auxotrophy
Dropout Complete
N.D.
+0.3
+0.3
-0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.4
+0.3
-0.2
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.4
-0.1
-0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.5
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
+0.7
-0.3
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.3
+0.6
-0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.7
-0.0
+0.3
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