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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14043 and 14044 are separated by 43 nucleotides
14044 and 14045 are separated by 149 nucleotides
14045 and 14046 are separated by 547 nucleotides
14046 and 14047 are separated by 343 nucleotides
mRNA_5675: 14043 - Hypothetical Protein, at 667,315 to 670,414
14043
mRNA_5676: 14044 - BLAST putative protein 27 [Rhizopogon vesiculosus], at 670,458 to 672,345
14044
mRNA_5677: 14045 - K15901 CGI121, TPRKB EKC/KEOPS complex subunit CGI121/TPRKB, at 672,495 to 673,304
14045
mRNA_5678: 14046 - K06005 SAP candidapepsin, at 673,852 to 675,422
14046
mRNA_5679: 14047 - KOG1944 Peroxisomal membrane protein MPV17 and related proteins, at 675,766 to 676,852
14047
Group
Condition
mRNA
_5675
mRNA
_5676
mRNA
_5677
mRNA
_5678
mRNA
_5679
14043
14044
14045
14046
14047
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-1.3
-0.3
+0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.5
-0.5
-0.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.0
-0.1
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.2
-0.3
-0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.5
+0.1
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.3
-0.3
-0.2
-0.0
growth on ricinoleic acid
YNB Glucose
+0.1
+0.3
-0.2
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.1
-0.0
-0.3
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
-0.1
-0.5
+0.7
growth on ypd
YPD
-0.1
-0.4
-0.0
+0.3
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.5
-0.1
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.2
-0.4
+0.0
+0.3
growth on oleic acid
YNB Glucose
-0.1
-0.1
-0.0
+0.2
+0.4
auxotrophy
YNB Glucose
+0.2
+0.3
-0.4
-0.3
+0.6
growth on oleic acid
YNB Oleic Acid
+0.4
-0.1
-0.2
+0.3
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.3
-0.2
-0.3
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.7
-0.3
+0.3
+0.1
auxotrophy
Dropout Complete
+0.3
+0.3
-0.1
-0.3
+0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.5
-0.1
-0.0
+0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.6
-0.1
-0.0
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.7
-0.0
+0.3
+0.7
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