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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14045 and 14046 are separated by 547 nucleotides
14046 and 14047 are separated by 343 nucleotides
14047 and 14048 are separated by 223 nucleotides
14048 and 14049 are separated by 390 nucleotides
mRNA_5677: 14045 - K15901 CGI121, TPRKB EKC/KEOPS complex subunit CGI121/TPRKB, at 672,495 to 673,304
14045
mRNA_5678: 14046 - K06005 SAP candidapepsin, at 673,852 to 675,422
14046
mRNA_5679: 14047 - KOG1944 Peroxisomal membrane protein MPV17 and related proteins, at 675,766 to 676,852
14047
mRNA_5680: 14048 - Hypothetical Protein, at 677,076 to 678,500
14048
mRNA_5681: 14049 - KOG3146 Dolichyl pyrophosphate phosphatase and related acid phosphatases, at 678,891 to 679,763
14049
Group
Condition
mRNA
_5677
mRNA
_5678
mRNA
_5679
mRNA
_5680
mRNA
_5681
14045
14046
14047
14048
14049
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.2
-0.0
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
-0.0
-0.1
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.2
+0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.2
-0.3
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.3
+0.4
-0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.1
-0.1
+0.1
N.D.
auxotrophy
YNB Glucose
-0.4
-0.3
+0.6
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.5
+0.7
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.3
+0.5
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.0
+0.3
+0.1
N.D.
auxotrophy
Dropout Complete
-0.1
-0.3
+0.7
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.3
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
+0.4
-0.1
N.D.
growth on oleic acid
YNB Glucose
-0.0
+0.2
+0.4
-0.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.1
+0.3
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
+0.5
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.4
+0.2
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
+0.3
+0.2
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
+0.0
+0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.3
+0.7
+0.0
N.D.
growth on ypd
YPD
-0.0
+0.3
+0.5
+0.3
N.D.
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