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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14050 and 14051 are separated by 1080 nucleotides
14051 and 14052 are separated by 74 nucleotides
14052 and 14053 are separated by 108 nucleotides
14053 and 14054 are separated by 139 nucleotides
mRNA_5682: 14050 - K03349 APC2 anaphase-promoting complex subunit 2, at 679,851 to 681,974
14050
mRNA_5683: 14051 - K15505 RAD5 DNA repair protein RAD5, at 683,055 to 687,923
14051
mRNA_5684: 14052 - K07404 pgl 6-phosphogluconolactonase, at 687,998 to 689,292
14052
mRNA_5685: 14053 - HMMPfam-Complex 1 protein (LYR family)-PF05347, at 689,401 to 690,702
14053
mRNA_5686: 14054 - K05294 PGAP1 glycosylphosphatidylinositol deacylase, at 690,842 to 694,591
14054
Group
Condition
mRNA
_5682
mRNA
_5683
mRNA
_5684
mRNA
_5685
mRNA
_5686
14050
14051
14052
14053
14054
facs on lipid accumulation
Sorted Low BODIPY Gate
-4.7
+0.3
-0.2
N.D.
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.0
+0.2
-0.1
N.D.
-1.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.7
+0.2
+0.1
N.D.
-1.2
auxotrophy
YNB Glucose 75mM Methionine
-2.2
-0.1
+0.0
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-1.4
+0.1
-0.1
N.D.
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-1.9
-0.1
-0.1
N.D.
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-1.5
+0.1
-0.1
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-2.1
+0.4
-0.2
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-2.0
+0.2
+0.1
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-1.2
+0.2
-0.1
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.3
+0.2
-0.1
N.D.
-0.4
growth on ypd
YPD
-0.8
+0.3
-0.2
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.7
+0.1
-0.0
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-1.0
+0.1
+0.0
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.1
-0.1
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
-0.2
-0.0
+0.1
N.D.
+0.0
auxotrophy
YNB Glucose
-0.4
-0.1
+0.2
N.D.
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.1
-0.1
N.D.
+0.6
auxotrophy
Dropout Complete
-0.2
-0.1
+0.1
N.D.
+0.6
growth on ricinoleic acid
YNB Glucose
+0.2
+0.0
-0.1
N.D.
+0.2
growth on oleic acid
YNB Glucose
-0.1
+0.1
+0.2
N.D.
+0.7
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