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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14052 and 14053 are separated by 108 nucleotides
14053 and 14054 are separated by 139 nucleotides
14054 and 14055 are separated by 340 nucleotides
14055 and 14056 are separated by 269 nucleotides
mRNA_5684: 14052 - K07404 pgl 6-phosphogluconolactonase, at 687,998 to 689,292
14052
mRNA_5685: 14053 - HMMPfam-Complex 1 protein (LYR family)-PF05347, at 689,401 to 690,702
14053
mRNA_5686: 14054 - K05294 PGAP1 glycosylphosphatidylinositol deacylase, at 690,842 to 694,591
14054
mRNA_5687: 14055 - K08764 SCP2, SCPX sterol carrier protein 2, at 694,932 to 696,791
14055
mRNA_5688: 14056 - K12199 VTA1, LIP5 vacuolar protein sorting-associated protein VTA1, at 697,061 to 698,504
14056
Group
Condition
mRNA
_5684
mRNA
_5685
mRNA
_5686
mRNA
_5687
mRNA
_5688
14052
14053
14054
14055
14056
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
N.D.
-0.6
-1.1
-3.9
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-0.5
-0.3
-2.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
-0.3
-0.5
-1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
-1.2
-0.6
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
-0.4
-0.4
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
+0.2
-0.4
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
+0.1
-0.0
-0.9
auxotrophy
YNB Glucose 75mM Arginine
+0.0
N.D.
+0.3
-0.1
-0.7
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.0
-0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
+0.1
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
+0.2
+0.1
-0.3
growth on ypd
YPD
-0.2
N.D.
-0.2
-0.2
+0.7
auxotrophy
Dropout Complete
+0.1
N.D.
+0.6
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
-1.2
+0.0
+1.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
+0.6
-0.4
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
+0.1
+0.0
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.4
+0.1
+1.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.4
-0.1
+0.6
growth on oleic acid
YNB Glucose
+0.2
N.D.
+0.7
-0.0
-0.2
auxotrophy
YNB Glucose
+0.2
N.D.
+0.3
+0.3
+0.6
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
+0.2
+0.2
+1.5
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