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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14055 and 14056 are separated by 269 nucleotides
14056 and 14057 are separated by 121 nucleotides
14057 and 14058 are separated by 279 nucleotides
14058 and 14059 are separated by 67 nucleotides
mRNA_5687: 14055 - K08764 SCP2, SCPX sterol carrier protein 2, at 694,932 to 696,791
14055
mRNA_5688: 14056 - K12199 VTA1, LIP5 vacuolar protein sorting-associated protein VTA1, at 697,061 to 698,504
14056
mRNA_5689: 14057 - KOG4206 Spliceosomal protein snRNP-U1A/U2B, at 698,626 to 699,781
14057
mRNA_5690: 14058 - K17710 PTCD1 pentatricopeptide repeat domain-containing protein 1, at 700,061 to 702,418
14058
mRNA_5691: 14059 - K05956 RABGGTB geranylgeranyl transferase type-2 subunit beta, at 702,486 to 703,817
14059
Group
Condition
mRNA
_5687
mRNA
_5688
mRNA
_5689
mRNA
_5690
mRNA
_5691
14055
14056
14057
14058
14059
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
-3.9
-1.9
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-2.1
-1.3
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-1.0
-0.6
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.9
-0.6
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.7
-0.6
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.0
-0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
+0.5
-0.5
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.3
-0.2
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.0
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.2
-0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.1
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.3
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.4
+0.9
N.D.
N.D.
auxotrophy
Dropout Complete
-0.3
-0.3
+0.7
N.D.
N.D.
growth on ypd
YPD
-0.2
+0.7
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.6
-0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.0
-0.2
+0.6
N.D.
N.D.
auxotrophy
YNB Glucose
+0.3
+0.6
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+1.2
+0.5
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+1.1
+0.6
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
+1.5
+0.7
N.D.
N.D.
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