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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14061 and 14062 are separated by 244 nucleotides
14062 and 14063 are separated by 624 nucleotides
14063 and 14064 are separated by 356 nucleotides
14064 and 14065 are separated by 296 nucleotides
mRNA_5693: 14061 - KOG4186 Peroxisomal biogenesis protein (peroxin), at 704,894 to 706,050
14061
mRNA_5694: 14062 - HMMPfam-Pyridoxamine 5'-phosphate oxidase-PF13883,SUPERFAMILY--SSF50475, at 706,295 to 707,436
14062
mRNA_5695: 14063 - K08869 ADCK, ABC1 aarF domain-containing kinase, at 708,061 to 710,208
14063
mRNA_5696: 14064 - K07152 SCO1_2 protein SCO1/2, at 710,565 to 711,827
14064
mRNA_5697: 14065 - K14568 EMG1, NEP1 rRNA small subunit pseudouridine methyltransferase Nep1, at 712,124 to 713,421
14065
Group
Condition
mRNA
_5693
mRNA
_5694
mRNA
_5695
mRNA
_5696
mRNA
_5697
14061
14062
14063
14064
14065
growth on ricinoleic acid
YNB Ricinoleic Acid
-3.9
+0.2
-1.7
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-3.7
-0.1
-1.0
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.7
+0.0
-1.6
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.0
-1.5
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.1
-1.1
N.D.
N.D.
growth on ypd
YPD
-1.3
+0.0
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.4
-1.1
N.D.
N.D.
auxotrophy
YNB Glucose
-0.2
+0.2
-1.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.3
-0.5
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.3
-0.2
-0.6
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-1.2
+0.3
-0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.2
-0.7
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.6
+0.1
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
-0.6
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.4
-0.8
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.3
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.2
+0.4
N.D.
N.D.
auxotrophy
Dropout Complete
-0.0
+0.2
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.2
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.1
-0.1
N.D.
N.D.
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