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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14065 and 14066 are separated by 811 nucleotides
14066 and 14067 are separated by 449 nucleotides
14067 and 14068 are separated by 357 nucleotides
14068 and 14069 are separated by 103 nucleotides
mRNA_5697: 14065 - K14568 EMG1, NEP1 rRNA small subunit pseudouridine methyltransferase Nep1, at 712,124 to 713,421
14065
mRNA_5698: 14066 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 714,233 to 715,636
14066
mRNA_5699: 14067 - HMMPfam-Vault protein inter-alpha-trypsin domain-PF08487,HMMPfam-von Willebrand factor type A domain-PF13768,ProSiteProfiles-VWFA domain profile.-PS50234,ProSiteProfiles-VIT domain profile.-PS51468,SMART-von Willebrand factor (vWF) type A domain-SM00327,SMART-Vault protein Inter-alpha-Trypsin domain-SM00609,SUPERFAMILY--SSF53300, at 716,086 to 718,925
14067
mRNA_5700: 14068 - KOG0143 Iron/ascorbate family oxidoreductases, at 719,283 to 720,938
14068
mRNA_5701: 14069 - K13120 FAM32A protein FAM32A, at 721,042 to 721,632
14069
Group
Condition
mRNA
_5697
mRNA
_5698
mRNA
_5699
mRNA
_5700
mRNA
_5701
14065
14066
14067
14068
14069
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
+0.0
-0.1
-1.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
-0.1
+0.2
-1.6
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
-0.0
+0.4
-1.6
auxotrophy
YNB Glucose
N.D.
-0.3
+0.4
-0.0
-1.7
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
-0.1
+0.3
-1.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.6
+0.3
-0.1
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.1
-0.1
-0.9
auxotrophy
Dropout Complete
N.D.
-0.2
+0.3
-0.1
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
-0.0
-0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
+0.2
-0.1
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.3
+0.1
+0.3
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.5
+0.1
+0.2
-1.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.2
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
-0.0
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.4
+0.3
+0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.1
+0.1
+0.1
growth on ypd
YPD
N.D.
-0.2
+0.3
-0.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
-0.0
-0.0
+0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
+0.4
+0.1
+0.2
growth on oleic acid
YNB Glucose
N.D.
-0.2
+0.2
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
-0.2
-0.1
+0.9
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