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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14067 and 14068 are separated by 357 nucleotides
14068 and 14069 are separated by 103 nucleotides
14069 and 14070 are separated by 279 nucleotides
14070 and 14071 are separated by 832 nucleotides
mRNA_5699: 14067 - HMMPfam-Vault protein inter-alpha-trypsin domain-PF08487,HMMPfam-von Willebrand factor type A domain-PF13768,ProSiteProfiles-VWFA domain profile.-PS50234,ProSiteProfiles-VIT domain profile.-PS51468,SMART-von Willebrand factor (vWF) type A domain-SM00327,SMART-Vault protein Inter-alpha-Trypsin domain-SM00609,SUPERFAMILY--SSF53300, at 716,086 to 718,925
14067
mRNA_5700: 14068 - KOG0143 Iron/ascorbate family oxidoreductases, at 719,283 to 720,938
14068
mRNA_5701: 14069 - K13120 FAM32A protein FAM32A, at 721,042 to 721,632
14069
mRNA_5702: 14070 - K09478 ACADSB short/branched chain acyl-CoA dehydrogenase, at 721,912 to 723,848
14070
mRNA_5703: 14071 - KOG1289 Amino acid transporters, at 724,681 to 726,988
14071
Group
Condition
mRNA
_5699
mRNA
_5700
mRNA
_5701
mRNA
_5702
mRNA
_5703
14067
14068
14069
14070
14071
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.2
-1.6
-3.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.1
-1.6
-2.1
+0.3
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
+0.0
-2.0
+0.1
growth on ricinoleic acid
YNB Glucose
-0.0
+0.4
-1.6
-0.2
+0.1
auxotrophy
Dropout Complete
+0.3
-0.1
-0.8
-0.7
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.3
-1.3
+0.1
-0.0
auxotrophy
YNB Glucose
+0.4
-0.0
-1.7
-0.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
-1.2
-0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.1
-0.5
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
-0.9
+0.6
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.1
-0.2
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.2
-0.3
+0.6
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.3
-1.1
-0.0
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.1
-0.6
-0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+0.1
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.2
-0.1
-0.4
+0.4
growth on ypd
YPD
+0.3
-0.0
+0.2
-0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.0
+0.6
-0.1
+0.1
growth on oleic acid
YNB Glucose
+0.2
+0.1
+0.5
+0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.1
+0.2
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
+0.9
+0.7
-0.2
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