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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14069 and 14070 are separated by 279 nucleotides
14070 and 14071 are separated by 832 nucleotides
14071 and 14072 are separated by 1037 nucleotides
14072 and 14073 are separated by 634 nucleotides
mRNA_5701: 14069 - K13120 FAM32A protein FAM32A, at 721,042 to 721,632
14069
mRNA_5702: 14070 - K09478 ACADSB short/branched chain acyl-CoA dehydrogenase, at 721,912 to 723,848
14070
mRNA_5703: 14071 - KOG1289 Amino acid transporters, at 724,681 to 726,988
14071
mRNA_5704: 14072 - KOG2483 Upstream transcription factor 2/L-myc-2 protein, at 728,026 to 730,424
14072
mRNA_5705: 14073 - HMMPfam-Cysteine-rich secretory protein family-PF00188,SUPERFAMILY--SSF55797, at 731,059 to 731,970
14073
Group
Condition
mRNA
_5701
mRNA
_5702
mRNA
_5703
mRNA
_5704
mRNA
_5705
14069
14070
14071
14072
14073
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.6
-3.0
+0.2
-1.3
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.6
-2.1
+0.3
-1.5
+0.0
auxotrophy
Dropout Complete
-0.8
-0.7
+0.1
-0.4
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.4
+0.2
-0.7
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
-0.0
+0.4
+0.2
-1.7
growth on oleic acid
YNB Oleic Acid
+0.0
-2.0
+0.1
-0.4
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-1.2
-0.1
+0.3
-0.5
-0.6
auxotrophy
YNB Glucose
-1.7
-0.1
+0.4
-0.4
-0.3
growth on ricinoleic acid
YNB Glucose
-1.6
-0.2
+0.1
-0.4
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.3
+0.1
-0.0
+0.1
-0.9
growth on ypd
YPD
+0.2
-0.1
-0.0
-0.4
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.6
-0.1
+0.3
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.4
+0.4
+0.1
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.6
-0.1
+0.1
-1.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.1
-0.1
+0.0
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.3
+0.1
-0.1
+0.2
growth on oleic acid
YNB Glucose
+0.5
+0.0
+0.1
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.6
-0.4
-0.1
+1.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.3
+0.0
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.9
+0.6
-0.2
+0.8
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.9
+0.7
-0.2
-0.2
+0.5
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