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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14073 and 14074 overlap by 26 nucleotides
14074 and 14075 are separated by 3297 nucleotides
14075 and 14076 are separated by 840 nucleotides
14076 and 14077 are separated by 638 nucleotides
mRNA_5705: 14073 - HMMPfam-Cysteine-rich secretory protein family-PF00188,SUPERFAMILY--SSF55797, at 731,059 to 731,970
14073
mRNA_5706: 14074 - Hypothetical Protein, at 731,945 to 733,165
14074
mRNA_5707: 14075 - Hypothetical Protein, at 736,463 to 742,238
14075
mRNA_5708: 14076 - KOG4774 Uncharacterized conserved protein, at 743,079 to 743,817
14076
mRNA_5709: 14077 - K06647 MBP1 transcription factor MBP1, at 744,456 to 746,952
14077
Group
Condition
mRNA
_5705
mRNA
_5706
mRNA
_5707
mRNA
_5708
mRNA
_5709
14073
14074
14075
14076
14077
ypd buoyancy
40 hrs No Buoyancy Separation
-1.7
+0.0
+0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.3
-0.1
N.D.
N.D.
auxotrophy
Dropout Complete
-0.7
+0.1
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose
-0.3
-0.2
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
+0.2
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.3
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
+0.1
+0.3
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.0
-0.3
-0.2
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.0
-0.4
-0.0
N.D.
N.D.
growth on ypd
YPD
-0.4
+0.3
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.4
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
+0.6
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.4
-0.4
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.0
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.5
-0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.4
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.5
-0.3
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.1
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.0
-0.1
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
+0.4
+0.0
N.D.
N.D.
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