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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14083 and 14084 are separated by 501 nucleotides
14084 and 14085 are separated by 312 nucleotides
14085 and 14086 are separated by 146 nucleotides
14086 and 14087 are separated by 277 nucleotides
mRNA_5715: 14083 - BLAST Elongator complex protein 4 [Ceraceosorus bombacis], at 757,827 to 758,501
14083
mRNA_5716: 14084 - Hypothetical Protein, at 759,003 to 760,646
14084
mRNA_5717: 14085 - K20524 LSB5 LAS seventeen-binding protein 5, at 760,959 to 763,265
14085
mRNA_5718: 14086 - SUPERFAMILY--SSF50370, at 763,412 to 765,448
14086
mRNA_5719: 14087 - K00290 LYS1 saccharopine dehydrogenase (NAD+, L-lysine forming), at 765,726 to 767,088
14087
Group
Condition
mRNA
_5715
mRNA
_5716
mRNA
_5717
mRNA
_5718
mRNA
_5719
14083
14084
14085
14086
14087
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.1
-0.5
-0.7
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.1
-1.3
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.1
-0.1
-0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.3
-0.7
-0.9
N.D.
growth on ypd
YPD
+0.1
+0.1
-0.3
-0.6
N.D.
auxotrophy
Dropout Complete
+0.5
+0.1
-0.5
-0.6
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.3
-0.1
-0.0
N.D.
auxotrophy
YNB Glucose
+0.5
-0.0
-0.2
-0.5
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.3
-0.3
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.7
+0.0
-0.3
-0.6
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.7
+0.1
-0.2
-0.6
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.2
+0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
-0.0
-0.2
+0.1
N.D.
growth on oleic acid
YNB Glucose
+0.4
+0.1
-0.2
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
+0.1
+0.1
-0.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.3
-0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.0
+0.2
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.4
-0.2
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.2
+0.2
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.7
+0.0
-0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.1
+0.4
-0.1
N.D.
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