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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14084 and 14085 are separated by 312 nucleotides
14085 and 14086 are separated by 146 nucleotides
14086 and 14087 are separated by 277 nucleotides
14087 and 14088 are separated by 384 nucleotides
mRNA_5716: 14084 - Hypothetical Protein, at 759,003 to 760,646
14084
mRNA_5717: 14085 - K20524 LSB5 LAS seventeen-binding protein 5, at 760,959 to 763,265
14085
mRNA_5718: 14086 - SUPERFAMILY--SSF50370, at 763,412 to 765,448
14086
mRNA_5719: 14087 - K00290 LYS1 saccharopine dehydrogenase (NAD+, L-lysine forming), at 765,726 to 767,088
14087
mRNA_5720: 14088 - K04392 RAC1 Ras-related C3 botulinum toxin substrate 1, at 767,473 to 768,381
14088
Group
Condition
mRNA
_5716
mRNA
_5717
mRNA
_5718
mRNA
_5719
mRNA
_5720
14084
14085
14086
14087
14088
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.5
-0.7
N.D.
-1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-1.3
+0.2
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.1
-0.0
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.4
-0.1
N.D.
-1.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
-0.3
N.D.
-0.1
growth on ypd
YPD
+0.1
-0.3
-0.6
N.D.
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.7
-0.9
N.D.
+0.8
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.3
-0.6
N.D.
+0.8
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
-0.6
N.D.
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
-0.5
N.D.
+0.3
auxotrophy
Dropout Complete
+0.1
-0.5
-0.6
N.D.
+1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.2
-0.2
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.3
+0.1
N.D.
+0.3
auxotrophy
YNB Glucose
-0.0
-0.2
-0.5
N.D.
+1.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.3
+0.1
N.D.
+1.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.2
-0.2
N.D.
+0.8
growth on oleic acid
YNB Glucose
+0.1
-0.2
-0.2
N.D.
+1.1
growth on ricinoleic acid
YNB Glucose
-0.0
-0.2
+0.1
N.D.
+1.5
growth on oleic acid
YNB Oleic Acid
+0.0
-0.1
-0.1
N.D.
+2.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.1
-0.1
N.D.
+2.8
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.2
-0.1
N.D.
+3.2
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