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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14086 and 14087 are separated by 277 nucleotides
14087 and 14088 are separated by 384 nucleotides
14088 and 14089 are separated by 350 nucleotides
14089 and 14090 are separated by 210 nucleotides
mRNA_5718: 14086 - SUPERFAMILY--SSF50370, at 763,412 to 765,448
14086
mRNA_5719: 14087 - K00290 LYS1 saccharopine dehydrogenase (NAD+, L-lysine forming), at 765,726 to 767,088
14087
mRNA_5720: 14088 - K04392 RAC1 Ras-related C3 botulinum toxin substrate 1, at 767,473 to 768,381
14088
mRNA_5721: 14089 - K19219 JMJD7 jumonji domain-containing protein 7, at 768,732 to 770,042
14089
mRNA_5722: 14090 - SUPERFAMILY--SSF52047, at 770,253 to 773,842
14090
Group
Condition
mRNA
_5718
mRNA
_5719
mRNA
_5720
mRNA
_5721
mRNA
_5722
14086
14087
14088
14089
14090
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
-1.3
-0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
N.D.
-1.0
+0.5
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
-0.4
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
N.D.
+0.3
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
+0.1
-0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.3
N.D.
-0.1
+0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
-0.1
-0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
N.D.
+0.8
+0.1
-0.1
growth on ypd
YPD
-0.6
N.D.
+0.4
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
+0.8
-0.2
+0.1
auxotrophy
Dropout Complete
-0.6
N.D.
+1.0
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.6
N.D.
+0.7
+0.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
+0.3
+0.0
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.6
N.D.
+0.8
+0.4
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
+1.2
+0.1
-0.4
auxotrophy
YNB Glucose
-0.5
N.D.
+1.2
+0.5
+0.3
growth on oleic acid
YNB Glucose
-0.2
N.D.
+1.1
+0.3
+0.4
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+1.5
+0.4
+0.1
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
+2.0
+0.4
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
+2.8
+0.5
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
+3.2
+0.6
-0.1
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