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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14088 and 14089 are separated by 350 nucleotides
14089 and 14090 are separated by 210 nucleotides
14090 and 14091 are separated by 349 nucleotides
14091 and 14092 are separated by 114 nucleotides
mRNA_5720: 14088 - K04392 RAC1 Ras-related C3 botulinum toxin substrate 1, at 767,473 to 768,381
14088
mRNA_5721: 14089 - K19219 JMJD7 jumonji domain-containing protein 7, at 768,732 to 770,042
14089
mRNA_5722: 14090 - SUPERFAMILY--SSF52047, at 770,253 to 773,842
14090
mRNA_5723: 14091 - K15447 TRM44, METTL19 tRNASer (uridine44-2'-O)-methyltransferase, at 774,192 to 776,044
14091
mRNA_5724: 14092 - K05310 GPI7 ethanolaminephosphotransferase, at 776,159 to 779,515
14092
Group
Condition
mRNA
_5720
mRNA
_5721
mRNA
_5722
mRNA
_5723
mRNA
_5724
14088
14089
14090
14091
14092
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.3
-0.1
-0.2
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
-0.3
-0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.1
-0.4
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
-0.2
+0.1
-0.4
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
+0.1
-0.1
-0.9
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
-0.1
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.3
-0.2
+0.6
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
+0.5
+0.0
+0.5
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.3
-0.1
+0.8
+0.0
auxotrophy
Dropout Complete
+1.0
+0.2
-0.0
-0.2
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.0
+0.3
+0.4
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+1.2
+0.1
-0.4
+0.0
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.8
+0.4
+0.3
+0.0
-0.2
growth on oleic acid
YNB Glucose
+1.1
+0.3
+0.4
-0.1
-0.2
growth on ypd
YPD
+0.4
-0.0
+0.2
+1.3
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.7
+0.4
+0.1
+0.8
-0.2
auxotrophy
YNB Glucose
+1.2
+0.5
+0.3
+0.5
-0.3
growth on ricinoleic acid
YNB Glucose
+1.5
+0.4
+0.1
+0.6
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+2.8
+0.5
+0.4
-0.0
-0.5
growth on oleic acid
YNB Oleic Acid
+2.0
+0.4
+0.3
+0.7
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+3.2
+0.6
-0.1
+0.2
-0.2
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