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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14091 and 14092 are separated by 114 nucleotides
14092 and 14093 are separated by 95 nucleotides
14093 and 14094 are separated by 362 nucleotides
14094 and 14095 are separated by 486 nucleotides
mRNA_5723: 14091 - K15447 TRM44, METTL19 tRNASer (uridine44-2'-O)-methyltransferase, at 774,192 to 776,044
14091
mRNA_5724: 14092 - K05310 GPI7 ethanolaminephosphotransferase, at 776,159 to 779,515
14092
mRNA_5725: 14093 - K03234 EEF2 elongation factor 2, at 779,611 to 783,273
14093
mRNA_5726: 14094 - KOG2539 Mitochondrial/chloroplast ribosome small subunit component, at 783,636 to 785,944
14094
mRNA_5727: 14095 - HMMPfam-Elongation factor G C-terminus-PF00679,SUPERFAMILY--SSF54980, at 786,431 to 787,168
14095
Group
Condition
mRNA
_5723
mRNA
_5724
mRNA
_5725
mRNA
_5726
mRNA
_5727
14091
14092
14093
14094
14095
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.5
-1.4
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.2
-1.1
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.2
-1.6
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.2
-0.6
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.7
-0.0
-1.5
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
-0.0
+0.1
N.D.
N.D.
auxotrophy
Dropout Complete
-0.2
-0.4
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.2
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
-0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.6
+0.1
-1.0
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.0
-0.4
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.1
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.4
+0.9
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.8
-0.2
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.2
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose
+0.5
-0.3
+0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.8
+0.0
+0.3
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.2
+1.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
-0.2
+1.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
+1.5
N.D.
N.D.
growth on ypd
YPD
+1.3
+0.0
+0.5
N.D.
N.D.
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