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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14095 and 14096 are separated by 172 nucleotides
14096 and 14097 are separated by 234 nucleotides
14097 and 14098 are separated by 218 nucleotides
14098 and 14099 are separated by 4223 nucleotides
mRNA_5727: 14095 - HMMPfam-Elongation factor G C-terminus-PF00679,SUPERFAMILY--SSF54980, at 786,431 to 787,168
14095
mRNA_5728: 14096 - K03644 lipA lipoyl synthase, at 787,341 to 788,900
14096
mRNA_5729: 14097 - HMMPfam-MT-A70-PF05063,ProSiteProfiles-MT-A70-like family profile.-PS51143, at 789,135 to 790,820
14097
mRNA_5730: 14098 - SUPERFAMILY--SSF47113, at 791,039 to 793,394
14098
mRNA_5731: 14099 - Hypothetical Protein, at 797,618 to 798,076
14099
Group
Condition
mRNA
_5727
mRNA
_5728
mRNA
_5729
mRNA
_5730
mRNA
_5731
14095
14096
14097
14098
14099
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.4
-0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.4
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.1
-0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.8
+0.6
-0.1
auxotrophy
YNB Glucose
N.D.
N.D.
-0.3
-0.1
+0.4
auxotrophy
Dropout Complete
N.D.
N.D.
-0.3
+0.1
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.6
+0.7
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.2
-0.0
+0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.0
-0.2
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.3
+0.4
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.3
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.2
-0.0
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.0
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
+0.1
+0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.3
-0.0
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.9
+0.2
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.3
-0.2
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.1
+0.5
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
+0.1
+0.5
growth on ypd
YPD
N.D.
N.D.
+0.1
+0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+1.1
+0.4
+0.1
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