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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14096 and 14097 are separated by 234 nucleotides
14097 and 14098 are separated by 218 nucleotides
14098 and 14099 are separated by 4223 nucleotides
14099 and 14100 are separated by 486 nucleotides
mRNA_5728: 14096 - K03644 lipA lipoyl synthase, at 787,341 to 788,900
14096
mRNA_5729: 14097 - HMMPfam-MT-A70-PF05063,ProSiteProfiles-MT-A70-like family profile.-PS51143, at 789,135 to 790,820
14097
mRNA_5730: 14098 - SUPERFAMILY--SSF47113, at 791,039 to 793,394
14098
mRNA_5731: 14099 - Hypothetical Protein, at 797,618 to 798,076
14099
mRNA_5732: 14100 - HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Minimal binding motif of Hap4 for binding to Hap2/3/5-PF10297,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SUPERFAMILY--SSF57959, at 798,563 to 800,717
14100
Group
Condition
mRNA
_5728
mRNA
_5729
mRNA
_5730
mRNA
_5731
mRNA
_5732
14096
14097
14098
14099
14100
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
-0.2
+0.3
-2.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
-0.3
+0.2
-1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.3
-0.1
-1.0
auxotrophy
YNB Glucose
N.D.
-0.3
-0.1
+0.4
-1.0
auxotrophy
Dropout Complete
N.D.
-0.3
+0.1
+0.2
-1.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
+0.5
-0.1
-1.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.4
-0.1
+0.0
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.8
+0.6
-0.1
-0.5
growth on ricinoleic acid
YNB Glucose
N.D.
-0.6
+0.7
+0.1
-0.8
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
-0.0
+0.4
-0.7
growth on oleic acid
YNB Oleic Acid
N.D.
+0.0
+0.2
+0.1
-0.6
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.0
-0.2
+0.4
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.9
+0.2
-0.6
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.3
+0.4
+0.1
-0.3
growth on oleic acid
YNB Glucose
N.D.
+0.3
+0.1
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.1
+0.5
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.3
-0.0
+0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
-0.0
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
+0.1
+0.4
+0.1
growth on ypd
YPD
N.D.
+0.1
+0.1
+0.3
+0.9
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+1.1
+0.4
+0.1
+1.2
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