Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
14097 and 14098 are separated by 218 nucleotides
14098 and 14099 are separated by 4223 nucleotides
14099 and 14100 are separated by 486 nucleotides
14100 and 14101 overlap by 62 nucleotides
mRNA_5729: 14097 - HMMPfam-MT-A70-PF05063,ProSiteProfiles-MT-A70-like family profile.-PS51143, at 789,135 to 790,820
14097
mRNA_5730: 14098 - SUPERFAMILY--SSF47113, at 791,039 to 793,394
14098
mRNA_5731: 14099 - Hypothetical Protein, at 797,618 to 798,076
14099
mRNA_5732: 14100 - HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Minimal binding motif of Hap4 for binding to Hap2/3/5-PF10297,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,SUPERFAMILY--SSF57959, at 798,563 to 800,717
14100
mRNA_5733: 14101 - KOG4197 FOG PPR repeat, at 800,656 to 803,521
14101
Group
Condition
mRNA
_5729
mRNA
_5730
mRNA
_5731
mRNA
_5732
mRNA
_5733
14097
14098
14099
14100
14101
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.2
+0.3
-2.7
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.3
-0.1
-1.0
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.3
+0.2
-1.0
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
+0.6
-0.1
-0.5
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.1
+0.0
-0.3
-0.3
auxotrophy
YNB Glucose
-0.3
-0.1
+0.4
-1.0
+0.3
auxotrophy
Dropout Complete
-0.3
+0.1
+0.2
-1.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.5
-0.1
-1.4
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.0
+0.4
-0.7
+0.1
growth on oleic acid
YNB Oleic Acid
+0.0
+0.2
+0.1
-0.6
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.9
+0.2
-0.6
-0.5
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.2
+0.4
-0.4
+0.2
growth on ricinoleic acid
YNB Glucose
-0.6
+0.7
+0.1
-0.8
+0.7
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.0
+0.2
+0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.0
+0.0
-0.1
-0.2
growth on oleic acid
YNB Glucose
+0.3
+0.1
-0.1
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
+0.4
+0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.1
+0.5
-0.3
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.4
+0.1
-0.3
+0.5
growth on ypd
YPD
+0.1
+0.1
+0.3
+0.9
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.1
+0.4
+0.1
+1.2
-0.3
remove
mRNA_5729
plot
remove
mRNA_5730
plot
remove
mRNA_5731
remove
mRNA_5732
plot
remove
mRNA_5733
plot