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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14109 and 14110 are separated by 1784 nucleotides
14110 and 14111 are separated by 224 nucleotides
14111 and 14112 are separated by 720 nucleotides
14112 and 14113 are separated by 822 nucleotides
mRNA_5741: 14109 - K00121 frmA, ADH5, adhC S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase, at 823,923 to 825,708
14109
mRNA_5742: 14110 - BLAST spindle pole body protein [Moesziomyces antarcticus T..., at 827,493 to 828,317
14110
mRNA_5743: 14111 - K05672 ABCC12 ATP-binding cassette, subfamily C (CFTR/MRP), member 12, at 828,542 to 833,992
14111
mRNA_5744: 14112 - KOG0250 DNA repair protein RAD18 (SMC family protein), at 834,713 to 839,482
14112
mRNA_5745: 14113 - K11665 INO80, INOC1 DNA helicase INO80, at 840,305 to 845,790
14113
Group
Condition
mRNA
_5741
mRNA
_5742
mRNA
_5743
mRNA
_5744
mRNA
_5745
14109
14110
14111
14112
14113
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
-0.2
N.D.
-1.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.7
+0.1
N.D.
-1.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
+0.1
N.D.
-1.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
-0.0
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.7
+0.1
N.D.
-1.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
+0.1
N.D.
-0.4
auxotrophy
Dropout Complete
N.D.
-0.8
+0.2
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
-0.0
N.D.
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.6
+0.2
N.D.
+0.1
auxotrophy
YNB Glucose
N.D.
-0.2
+0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
-0.3
N.D.
+0.0
growth on ypd
YPD
N.D.
+0.1
+0.1
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
+0.2
N.D.
-0.2
growth on oleic acid
YNB Glucose
N.D.
+0.3
+0.1
N.D.
-0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
-0.0
N.D.
+0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.0
N.D.
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
+0.1
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.5
-0.1
N.D.
+1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.5
+0.0
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.4
+0.1
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
+0.4
N.D.
+0.6
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