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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14111 and 14112 are separated by 720 nucleotides
14112 and 14113 are separated by 822 nucleotides
14113 and 14114 are separated by 1299 nucleotides
14114 and 14115 are separated by 354 nucleotides
mRNA_5743: 14111 - K05672 ABCC12 ATP-binding cassette, subfamily C (CFTR/MRP), member 12, at 828,542 to 833,992
14111
mRNA_5744: 14112 - KOG0250 DNA repair protein RAD18 (SMC family protein), at 834,713 to 839,482
14112
mRNA_5745: 14113 - K11665 INO80, INOC1 DNA helicase INO80, at 840,305 to 845,790
14113
mRNA_5746: 14114 - Hypothetical Protein, at 847,090 to 848,966
14114
mRNA_5747: 14115 - HMMPfam-F-box-like-PF12937, at 849,321 to 849,879
14115
Group
Condition
mRNA
_5743
mRNA
_5744
mRNA
_5745
mRNA
_5746
mRNA
_5747
14111
14112
14113
14114
14115
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
-1.4
-0.7
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-1.8
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-1.4
-0.2
+0.3
growth on ypd
YPD
+0.1
N.D.
-0.3
-0.6
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
-1.0
+0.1
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
N.D.
-0.5
-0.6
+0.4
growth on oleic acid
YNB Glucose
+0.1
N.D.
-0.5
-0.4
+0.4
growth on ricinoleic acid
YNB Glucose
-0.0
N.D.
-0.7
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
N.D.
+0.0
+0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
+0.2
-0.4
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
+0.6
-0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
+0.4
+0.0
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
+0.1
+0.2
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
+0.1
+0.5
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+1.1
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
-0.2
-0.0
+0.8
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
-0.4
+0.4
+0.7
auxotrophy
YNB Glucose
+0.1
N.D.
-0.1
+0.2
+0.7
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.3
+0.2
+0.3
auxotrophy
Dropout Complete
+0.2
N.D.
+0.1
+0.3
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
N.D.
+0.6
+0.4
+0.1
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