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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14113 and 14114 are separated by 1299 nucleotides
14114 and 14115 are separated by 354 nucleotides
14115 and 14116 are separated by 319 nucleotides
14116 and 14117 are separated by 124 nucleotides
mRNA_5745: 14113 - K11665 INO80, INOC1 DNA helicase INO80, at 840,305 to 845,790
14113
mRNA_5746: 14114 - Hypothetical Protein, at 847,090 to 848,966
14114
mRNA_5747: 14115 - HMMPfam-F-box-like-PF12937, at 849,321 to 849,879
14115
mRNA_5748: 14116 - K12260 SRX1 sulfiredoxin, at 850,199 to 850,740
14116
mRNA_5749: 14117 - K14863 YTM1, WDR12 ribosome biogenesis protein YTM1, at 850,865 to 852,979
14117
Group
Condition
mRNA
_5745
mRNA
_5746
mRNA
_5747
mRNA
_5748
mRNA
_5749
14113
14114
14115
14116
14117
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.4
-0.7
+0.1
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.4
-0.2
+0.3
-0.6
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-1.8
-0.3
+0.3
+0.1
N.D.
growth on ypd
YPD
-0.3
-0.6
-0.2
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.6
+0.4
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.0
+0.1
+0.4
-0.2
N.D.
growth on oleic acid
YNB Glucose
-0.5
-0.4
+0.4
+0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.5
-0.2
-0.8
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.1
+0.0
-0.5
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.4
+0.1
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.7
+0.1
+0.4
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.6
-0.1
-0.4
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.0
-0.0
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.0
+0.8
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
+0.2
+0.3
-0.3
N.D.
auxotrophy
YNB Glucose
-0.1
+0.2
+0.7
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.4
+0.7
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+1.1
-0.1
-0.2
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.2
+0.3
+0.2
N.D.
auxotrophy
Dropout Complete
+0.1
+0.3
+0.5
-0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.4
+0.1
-0.1
N.D.
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