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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14116 and 14117 are separated by 124 nucleotides
14117 and 14118 are separated by 268 nucleotides
14118 and 14119 are separated by 435 nucleotides
14119 and 14120 are separated by 856 nucleotides
mRNA_5748: 14116 - K12260 SRX1 sulfiredoxin, at 850,199 to 850,740
14116
mRNA_5749: 14117 - K14863 YTM1, WDR12 ribosome biogenesis protein YTM1, at 850,865 to 852,979
14117
mRNA_5750: 14118 - KOG2306 Uncharacterized conserved protein, at 853,248 to 855,227
14118
mRNA_5751: 14119 - K14708 SLC26A11 solute carrier family 26 (sodium-independent sulfate anion transporter), member 11, at 855,663 to 858,482
14119
mRNA_5752: 14120 - KOG0236 Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family), at 859,339 to 859,824
14120
Group
Condition
mRNA
_5748
mRNA
_5749
mRNA
_5750
mRNA
_5751
mRNA
_5752
14116
14117
14118
14119
14120
auxotrophy
YNB Glucose
-0.2
N.D.
+0.2
+0.3
-1.2
auxotrophy
Dropout Complete
-0.0
N.D.
+0.1
+0.0
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
N.D.
-0.5
-0.3
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
-0.0
+0.0
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
+0.2
-0.2
-0.3
growth on oleic acid
YNB Oleic Acid
-0.3
N.D.
-0.3
+0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
+0.1
+0.1
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.1
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
N.D.
+0.1
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
+0.1
+0.2
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
N.D.
+0.6
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.0
+0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
+0.2
+0.1
-0.1
growth on oleic acid
YNB Glucose
+0.0
N.D.
-0.1
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
N.D.
+0.6
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
+0.4
+0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
+0.1
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
-0.0
+0.0
+0.6
growth on ypd
YPD
-0.1
N.D.
-0.1
+0.3
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
+0.2
-0.1
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
+0.2
-0.0
+0.8
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