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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14118 and 14119 are separated by 435 nucleotides
14119 and 14120 are separated by 856 nucleotides
14120 and 14121 are separated by 792 nucleotides
14121 and 14122 are separated by 192 nucleotides
mRNA_5750: 14118 - KOG2306 Uncharacterized conserved protein, at 853,248 to 855,227
14118
mRNA_5751: 14119 - K14708 SLC26A11 solute carrier family 26 (sodium-independent sulfate anion transporter), member 11, at 855,663 to 858,482
14119
mRNA_5752: 14120 - KOG0236 Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family), at 859,339 to 859,824
14120
mRNA_5753: 14121 - K17267 COPG coatomer subunit gamma, at 860,617 to 864,021
14121
mRNA_5754: 14122 - KOG1721 FOG Zn-finger, at 864,214 to 867,057
14122
Group
Condition
mRNA
_5750
mRNA
_5751
mRNA
_5752
mRNA
_5753
mRNA
_5754
14118
14119
14120
14121
14122
auxotrophy
YNB Glucose
+0.2
+0.3
-1.2
N.D.
-1.0
growth on ricinoleic acid
YNB Glucose
+0.4
+0.0
-0.2
N.D.
-1.3
auxotrophy
Dropout Complete
+0.1
+0.0
-0.9
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.2
-0.3
N.D.
-0.8
growth on oleic acid
YNB Glucose
-0.1
-0.1
+0.3
N.D.
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.1
+0.5
N.D.
-1.2
growth on oleic acid
YNB Oleic Acid
-0.3
+0.0
+0.2
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
-0.3
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
-0.1
N.D.
-0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
-0.5
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
-0.2
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.0
-0.3
N.D.
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.3
+0.2
N.D.
+0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.0
+0.2
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.0
+0.8
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
-0.1
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
+0.3
N.D.
+0.1
growth on ypd
YPD
-0.1
+0.3
+0.6
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
+0.3
N.D.
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
+0.1
+0.1
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.0
+0.6
N.D.
+0.5
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