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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14121 and 14122 are separated by 192 nucleotides
14122 and 14123 are separated by 1627 nucleotides
14123 and 14124 are separated by 353 nucleotides
14124 and 14125 are separated by 162 nucleotides
mRNA_5753: 14121 - K17267 COPG coatomer subunit gamma, at 860,617 to 864,021
14121
mRNA_5754: 14122 - KOG1721 FOG Zn-finger, at 864,214 to 867,057
14122
mRNA_5755: 14123 - HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277, at 868,685 to 870,428
14123
mRNA_5756: 14124 - HMMPfam-Myb-like DNA-binding domain-PF00249,ProSiteProfiles-Myb-like domain profile.-PS50090,ProSiteProfiles-Myb-type HTH DNA-binding domain profile.-PS51294,SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717,SUPERFAMILY--SSF46689, at 870,782 to 872,057
14124
mRNA_5757: 14125 - HMMPfam-Glycosyl hydrolase catalytic core-PF11790,SUPERFAMILY--SSF51445, at 872,220 to 874,136
14125
Group
Condition
mRNA
_5753
mRNA
_5754
mRNA
_5755
mRNA
_5756
mRNA
_5757
14121
14122
14123
14124
14125
auxotrophy
YNB Glucose
N.D.
-1.0
+0.3
-0.6
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.8
+0.1
-0.6
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-1.2
+0.4
-0.3
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-1.3
+0.6
-0.2
-0.1
auxotrophy
Dropout Complete
N.D.
-0.3
+0.0
-0.4
+0.0
growth on oleic acid
YNB Glucose
N.D.
-0.8
+0.2
-0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.1
-0.7
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.5
+0.5
-0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.5
+0.1
-0.4
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
+0.1
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
-0.4
+0.4
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.3
+0.3
-1.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
+0.2
-0.5
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
-0.1
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.8
+0.5
-0.8
-0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.1
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.5
+0.1
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.1
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.4
-0.1
+0.5
-0.3
growth on ypd
YPD
N.D.
-0.0
+0.3
+0.6
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.4
-0.0
+1.2
+0.1
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