Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 14124 and 14125 are separated by 162 nucleotides14125 and 14126 are separated by 284 nucleotides14126 and 14127 are separated by 862 nucleotides14127 and 14128 are separated by 154 nucleotides mRNA_5756: 14124 - HMMPfam-Myb-like DNA-binding domain-PF00249,ProSiteProfiles-Myb-like domain profile.-PS50090,ProSiteProfiles-Myb-type HTH DNA-binding domain profile.-PS51294,SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717,SUPERFAMILY--SSF46689, at 870,782 to 872,057 14124 mRNA_5757: 14125 - HMMPfam-Glycosyl hydrolase catalytic core-PF11790,SUPERFAMILY--SSF51445, at 872,220 to 874,136 14125 mRNA_5758: 14126 - K00627 DLAT, aceF, pdhC pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase), at 874,421 to 875,943 14126 mRNA_5759: 14127 - K14769 UTP11 U3 small nucleolar RNA-associated protein 11, at 876,806 to 878,161 14127 mRNA_5760: 14128 - K14015 NPLOC4, NPL4 nuclear protein localization protein 4 homolog, at 878,316 to 881,175 14128
Group Condition mRNA_5756 mRNA_5757 mRNA_5758 mRNA_5759 mRNA_5760
14124 14125 14126 14127 14128
facs on lipid accumulation Sorted High BODIPY Gate -0.8 -0.4 N.D. N.D. N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -1.1 +0.2 N.D. N.D. N.D.
auxotrophy YNB Glucose -0.6 -0.1 N.D. N.D. N.D.
facs on lipid accumulation Sorted No BODIPY Gate -0.5 -0.2 N.D. N.D. N.D.
auxotrophy YNB Glucose 75mM Methionine -0.6 +0.0 N.D. N.D. N.D.
ypd buoyancy 40 hrs Median Buoyancy -0.7 +0.2 N.D. N.D. N.D.
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 -0.3 N.D. N.D. N.D.
auxotrophy Dropout Complete -0.4 +0.0 N.D. N.D. N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid -0.3 -0.1 N.D. N.D. N.D.
growth on ricinoleic acid YNB Glucose -0.2 -0.1 N.D. N.D. N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 -0.4 N.D. N.D. N.D.
growth on oleic acid YNB Oleic Acid -0.2 -0.1 N.D. N.D. N.D.
auxotrophy YNB Glucose 75mM Arginine -0.4 +0.3 N.D. N.D. N.D.
growth on oleic acid YNB Glucose -0.1 +0.0 N.D. N.D. N.D.
ypd buoyancy 40 hrs Low Buoyancy +0.1 -0.0 N.D. N.D. N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.4 -0.3 N.D. N.D. N.D.
ypd buoyancy 40 hrs High Buoyancy +0.2 -0.0 N.D. N.D. N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.4 -0.2 N.D. N.D. N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.5 -0.3 N.D. N.D. N.D.
growth on ypd YPD +0.6 +0.1 N.D. N.D. N.D.
ypd buoyancy 40 hrs No Buoyancy Separation +1.2 +0.1 N.D. N.D. N.D.
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