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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14128 and 14129 are separated by 290 nucleotides
14129 and 14130 are separated by 673 nucleotides
14130 and 14131 are separated by 154 nucleotides
14131 and 14132 are separated by 174 nucleotides
mRNA_5760: 14128 - K14015 NPLOC4, NPL4 nuclear protein localization protein 4 homolog, at 878,316 to 881,175
14128
mRNA_5761: 14129 - K14997 SLC38A11 solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 11, at 881,466 to 883,589
14129
mRNA_5762: 14130 - SUPERFAMILY--SSF47095, at 884,263 to 884,826
14130
mRNA_5763: 14131 - HMMPfam-Lactonase, 7-bladed beta-propeller-PF10282,SUPERFAMILY--SSF51004, at 884,981 to 886,323
14131
mRNA_5764: 14132 - K07404 pgl 6-phosphogluconolactonase, at 886,498 to 887,807
14132
Group
Condition
mRNA
_5760
mRNA
_5761
mRNA
_5762
mRNA
_5763
mRNA
_5764
14128
14129
14130
14131
14132
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
-1.0
-0.0
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
-1.2
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.9
-0.1
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
-0.8
-0.1
-0.1
auxotrophy
Dropout Complete
N.D.
+0.2
-0.5
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
-0.3
+0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
-0.6
-0.0
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
-0.8
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
-0.2
-0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
-0.0
+0.2
-0.3
auxotrophy
YNB Glucose
N.D.
+0.2
-0.3
+0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
+0.0
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.3
-0.2
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+0.2
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
-0.1
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
+0.1
-0.0
-0.0
growth on oleic acid
YNB Glucose
N.D.
+0.3
-0.2
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.2
-0.1
+0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
+0.2
+0.0
+0.2
growth on ypd
YPD
N.D.
-0.1
+0.6
-0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.3
+0.7
+0.2
-0.0
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