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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14130 and 14131 are separated by 154 nucleotides
14131 and 14132 are separated by 174 nucleotides
14132 and 14133 are separated by 209 nucleotides
14133 and 14134 are separated by 73 nucleotides
mRNA_5762: 14130 - SUPERFAMILY--SSF47095, at 884,263 to 884,826
14130
mRNA_5763: 14131 - HMMPfam-Lactonase, 7-bladed beta-propeller-PF10282,SUPERFAMILY--SSF51004, at 884,981 to 886,323
14131
mRNA_5764: 14132 - K07404 pgl 6-phosphogluconolactonase, at 886,498 to 887,807
14132
mRNA_5765: 14133 - Interpro Promethin, at 888,017 to 888,883
14133
mRNA_5766: 14134 - SUPERFAMILY--SSF52058, at 888,957 to 890,660
14134
Group
Condition
mRNA
_5762
mRNA
_5763
mRNA
_5764
mRNA
_5765
mRNA
_5766
14130
14131
14132
14133
14134
growth on oleic acid
YNB Oleic Acid
-0.8
-0.1
-0.1
-0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
+0.0
-0.0
+0.3
-0.3
growth on ricinoleic acid
YNB Glucose
-1.2
+0.0
+0.0
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.0
-0.0
-0.2
+1.4
-0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.0
-0.2
+0.4
-0.1
auxotrophy
YNB Glucose
-0.3
+0.1
-0.0
+0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
+0.4
-0.3
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
+0.2
-0.0
-0.7
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.2
-0.3
+0.2
-0.3
auxotrophy
Dropout Complete
-0.5
-0.1
-0.2
+0.7
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.1
-0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.0
+0.2
+0.0
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.9
-0.1
+0.3
+0.8
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.0
-0.0
-0.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.1
-0.1
+0.3
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.0
+0.1
+0.3
+0.0
growth on oleic acid
YNB Glucose
-0.2
+0.1
+0.1
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.1
+0.1
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.1
-0.2
+1.0
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.1
-0.0
+1.2
-0.4
growth on ypd
YPD
+0.6
-0.0
+0.1
+0.4
+0.6
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