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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14133 and 14134 are separated by 73 nucleotides
14134 and 14135 are separated by 124 nucleotides
14135 and 14136 are separated by 833 nucleotides
14136 and 14137 are separated by 2914 nucleotides
mRNA_5765: 14133 - Interpro Promethin, at 888,017 to 888,883
14133
mRNA_5766: 14134 - SUPERFAMILY--SSF52058, at 888,957 to 890,660
14134
mRNA_5767: 14135 - K02606 ORC4 origin recognition complex subunit 4, at 890,785 to 894,210
14135
mRNA_5768: 14136 - Hypothetical Protein, at 895,044 to 899,242
14136
mRNA_5769: 14137 - Hypothetical Protein, at 902,157 to 903,800
14137
Group
Condition
mRNA
_5765
mRNA
_5766
mRNA
_5767
mRNA
_5768
mRNA
_5769
14133
14134
14135
14136
14137
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.4
N.D.
+0.0
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.4
N.D.
-0.0
+0.1
auxotrophy
YNB Glucose
+0.2
-0.3
N.D.
+0.2
-0.7
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.5
N.D.
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
N.D.
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.4
N.D.
+0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.3
N.D.
-0.2
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.0
N.D.
+0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.3
N.D.
+0.1
+0.1
auxotrophy
Dropout Complete
+0.7
-0.1
N.D.
+0.2
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.0
N.D.
-0.1
+0.5
growth on oleic acid
YNB Glucose
+0.1
+0.1
N.D.
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
N.D.
+0.3
+0.3
growth on ypd
YPD
+0.4
+0.6
N.D.
+0.1
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.0
N.D.
+0.1
+0.7
growth on ricinoleic acid
YNB Glucose
+0.3
+0.0
N.D.
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.4
-0.9
N.D.
-0.1
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.1
N.D.
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.8
-0.2
N.D.
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.0
-0.2
N.D.
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.2
-0.4
N.D.
+0.2
+0.4
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