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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14135 and 14136 are separated by 833 nucleotides
14136 and 14137 are separated by 2914 nucleotides
14137 and 14138 are separated by 476 nucleotides
14138 and 14139 are separated by 250 nucleotides
mRNA_5767: 14135 - K02606 ORC4 origin recognition complex subunit 4, at 890,785 to 894,210
14135
mRNA_5768: 14136 - Hypothetical Protein, at 895,044 to 899,242
14136
mRNA_5769: 14137 - Hypothetical Protein, at 902,157 to 903,800
14137
mRNA_5770: 14138 - K15171 SUPT4H1, SPT4 transcription elongation factor SPT4, at 904,277 to 904,949
14138
mRNA_5771: 14139 - K00921 PIKFYVE, FAB1 1-phosphatidylinositol-3-phosphate 5-kinase, at 905,200 to 913,412
14139
Group
Condition
mRNA
_5767
mRNA
_5768
mRNA
_5769
mRNA
_5770
mRNA
_5771
14135
14136
14137
14138
14139
growth on ypd
YPD
N.D.
+0.1
-0.6
-0.3
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
+0.7
-1.6
-0.4
auxotrophy
Dropout Complete
N.D.
+0.2
-0.6
-0.7
+0.1
auxotrophy
YNB Glucose
N.D.
+0.2
-0.7
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
+0.1
-0.0
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
+0.5
-0.4
-0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.3
+0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.0
-0.3
+0.8
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
+0.3
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.1
+0.4
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
-0.2
+0.1
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
+0.3
+0.5
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
+0.1
+0.5
-0.3
growth on oleic acid
YNB Glucose
N.D.
+0.1
+0.1
+0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
+0.1
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
+0.4
+0.0
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
+0.3
+0.0
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.1
+0.8
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.4
+0.4
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
+0.3
+0.7
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
+0.5
+1.3
-0.1
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