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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14136 and 14137 are separated by 2914 nucleotides
14137 and 14138 are separated by 476 nucleotides
14138 and 14139 are separated by 250 nucleotides
14139 and 14140 are separated by 76 nucleotides
mRNA_5768: 14136 - Hypothetical Protein, at 895,044 to 899,242
14136
mRNA_5769: 14137 - Hypothetical Protein, at 902,157 to 903,800
14137
mRNA_5770: 14138 - K15171 SUPT4H1, SPT4 transcription elongation factor SPT4, at 904,277 to 904,949
14138
mRNA_5771: 14139 - K00921 PIKFYVE, FAB1 1-phosphatidylinositol-3-phosphate 5-kinase, at 905,200 to 913,412
14139
mRNA_5772: 14140 - BLAST m serotype precursor [Moniliophthora roreri MCA 2..., at 913,489 to 916,106
14140
Group
Condition
mRNA
_5768
mRNA
_5769
mRNA
_5770
mRNA
_5771
mRNA
_5772
14136
14137
14138
14139
14140
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.7
-1.6
-0.4
-0.7
growth on ypd
YPD
+0.1
-0.6
-0.3
-0.4
-0.6
auxotrophy
Dropout Complete
+0.2
-0.6
-0.7
+0.1
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.1
-0.0
-0.4
-0.5
auxotrophy
YNB Glucose
+0.2
-0.7
+0.1
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.3
+0.3
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.5
-0.4
-0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.3
-0.1
-0.2
-0.1
growth on oleic acid
YNB Glucose
+0.1
+0.1
+0.3
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
+0.1
+0.4
+0.0
growth on oleic acid
YNB Oleic Acid
+0.3
+0.3
+0.0
+0.2
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.3
+0.5
-0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.3
+0.8
-0.5
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
+0.5
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.4
+0.0
+0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
+0.5
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.4
+0.0
+0.6
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
+0.8
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.4
+0.4
+0.3
+0.3
growth on ricinoleic acid
YNB Glucose
+0.3
+0.3
+0.7
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.5
+1.3
-0.1
+0.2
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