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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14141 and 14142 are separated by 582 nucleotides
14142 and 14143 are separated by 292 nucleotides
14143 and 14144 are separated by 360 nucleotides
14144 and 14145 are separated by 185 nucleotides
mRNA_5773: 14141 - Hypothetical Protein, at 916,684 to 917,418
14141
mRNA_5774: 14142 - K11982 RNF115_126 E3 ubiquitin-protein ligase RNF115/126, at 918,001 to 918,584
14142
mRNA_5775: 14143 - Hypothetical Protein, at 918,877 to 919,776
14143
mRNA_5776: 14144 - HMMPfam-Phosphatidylinositol-specific phospholipase C, X domain-PF00388,ProSiteProfiles-Phosphatidylinositol-specific phospholipase X-box domain profile.-PS50007,SUPERFAMILY--SSF51695, at 920,137 to 921,765
14144
mRNA_5777: 14145 - Hypothetical Protein, at 921,951 to 922,623
14145
Group
Condition
mRNA
_5773
mRNA
_5774
mRNA
_5775
mRNA
_5776
mRNA
_5777
14141
14142
14143
14144
14145
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.1
+0.5
+0.4
-0.7
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.2
-0.6
+0.0
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
+0.8
+0.7
-0.5
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.5
+0.2
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.2
+0.1
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.5
-0.2
+0.2
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.5
-0.3
+0.0
-0.3
growth on oleic acid
YNB Oleic Acid
-0.4
+0.4
+0.2
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
+0.1
-0.1
+0.5
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.2
+0.2
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.0
+0.2
+0.1
+0.2
auxotrophy
YNB Glucose
-0.2
-0.1
+0.3
+0.1
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.9
-0.5
-0.1
+0.3
growth on ypd
YPD
+0.6
+0.3
-0.1
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.2
+0.5
-0.1
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.5
+0.0
+0.2
-0.2
auxotrophy
Dropout Complete
-0.2
+0.8
+0.1
-0.1
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.0
+0.4
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.0
+0.4
-0.0
+0.6
growth on ricinoleic acid
YNB Glucose
-0.3
+0.3
+0.5
+0.2
+0.3
growth on oleic acid
YNB Glucose
-0.1
+0.1
+0.4
+0.4
+0.3
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