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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14142 and 14143 are separated by 292 nucleotides
14143 and 14144 are separated by 360 nucleotides
14144 and 14145 are separated by 185 nucleotides
14145 and 14146 are separated by 566 nucleotides
mRNA_5774: 14142 - K11982 RNF115_126 E3 ubiquitin-protein ligase RNF115/126, at 918,001 to 918,584
14142
mRNA_5775: 14143 - Hypothetical Protein, at 918,877 to 919,776
14143
mRNA_5776: 14144 - HMMPfam-Phosphatidylinositol-specific phospholipase C, X domain-PF00388,ProSiteProfiles-Phosphatidylinositol-specific phospholipase X-box domain profile.-PS50007,SUPERFAMILY--SSF51695, at 920,137 to 921,765
14144
mRNA_5777: 14145 - Hypothetical Protein, at 921,951 to 922,623
14145
mRNA_5778: 14146 - HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Transcription factor PAP1-PF08601,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF111430,SUPERFAMILY--SSF57959, at 923,190 to 924,639
14146
Group
Condition
mRNA
_5774
mRNA
_5775
mRNA
_5776
mRNA
_5777
mRNA
_5778
14142
14143
14144
14145
14146
ypd buoyancy
40 hrs No Buoyancy Separation
+0.9
-0.5
-0.1
+0.3
-1.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.2
-0.1
+0.1
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.6
+0.0
+0.5
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.5
-0.3
+0.0
-0.3
-0.2
growth on ypd
YPD
+0.3
-0.1
+0.2
-0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.4
-0.7
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.1
+0.1
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+0.0
+0.2
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.2
+0.1
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.2
+0.2
+0.3
+0.7
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.4
+0.2
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
-0.0
+0.3
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
+0.7
-0.5
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.1
+0.5
+0.3
+0.2
growth on oleic acid
YNB Oleic Acid
+0.4
+0.2
+0.0
+0.2
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.4
-0.0
+0.6
+0.3
auxotrophy
YNB Glucose
-0.1
+0.3
+0.1
+0.5
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.5
-0.1
+0.5
+0.4
growth on ricinoleic acid
YNB Glucose
+0.3
+0.5
+0.2
+0.3
+0.3
growth on oleic acid
YNB Glucose
+0.1
+0.4
+0.4
+0.3
+0.4
auxotrophy
Dropout Complete
+0.8
+0.1
-0.1
+0.4
+0.8
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