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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14143 and 14144 are separated by 360 nucleotides
14144 and 14145 are separated by 185 nucleotides
14145 and 14146 are separated by 566 nucleotides
14146 and 14147 are separated by 473 nucleotides
mRNA_5775: 14143 - Hypothetical Protein, at 918,877 to 919,776
14143
mRNA_5776: 14144 - HMMPfam-Phosphatidylinositol-specific phospholipase C, X domain-PF00388,ProSiteProfiles-Phosphatidylinositol-specific phospholipase X-box domain profile.-PS50007,SUPERFAMILY--SSF51695, at 920,137 to 921,765
14144
mRNA_5777: 14145 - Hypothetical Protein, at 921,951 to 922,623
14145
mRNA_5778: 14146 - HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Transcription factor PAP1-PF08601,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF111430,SUPERFAMILY--SSF57959, at 923,190 to 924,639
14146
mRNA_5779: 14147 - K14848 RRB1, GRWD1 ribosome assembly protein RRB1, at 925,113 to 926,759
14147
Group
Condition
mRNA
_5775
mRNA
_5776
mRNA
_5777
mRNA
_5778
mRNA
_5779
14143
14144
14145
14146
14147
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.1
+0.3
-1.5
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.0
-0.3
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.7
-0.1
-0.2
N.D.
growth on ypd
YPD
-0.1
+0.2
-0.2
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.1
+0.1
-0.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.0
+0.5
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
-0.5
-0.2
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.2
-0.2
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
+0.1
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.0
+0.3
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.1
+0.2
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.2
-0.1
-0.0
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
+0.0
+0.2
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.5
+0.3
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
+0.3
+0.7
N.D.
auxotrophy
Dropout Complete
+0.1
-0.1
+0.4
+0.8
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.1
+0.5
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.0
+0.6
+0.3
N.D.
growth on ricinoleic acid
YNB Glucose
+0.5
+0.2
+0.3
+0.3
N.D.
auxotrophy
YNB Glucose
+0.3
+0.1
+0.5
+0.6
N.D.
growth on oleic acid
YNB Glucose
+0.4
+0.4
+0.3
+0.4
N.D.
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