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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14144 and 14145 are separated by 185 nucleotides
14145 and 14146 are separated by 566 nucleotides
14146 and 14147 are separated by 473 nucleotides
14147 and 14148 are separated by 306 nucleotides
mRNA_5776: 14144 - HMMPfam-Phosphatidylinositol-specific phospholipase C, X domain-PF00388,ProSiteProfiles-Phosphatidylinositol-specific phospholipase X-box domain profile.-PS50007,SUPERFAMILY--SSF51695, at 920,137 to 921,765
14144
mRNA_5777: 14145 - Hypothetical Protein, at 921,951 to 922,623
14145
mRNA_5778: 14146 - HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Transcription factor PAP1-PF08601,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF111430,SUPERFAMILY--SSF57959, at 923,190 to 924,639
14146
mRNA_5779: 14147 - K14848 RRB1, GRWD1 ribosome assembly protein RRB1, at 925,113 to 926,759
14147
mRNA_5780: 14148 - KOG2989 Uncharacterized conserved protein, at 927,066 to 928,208
14148
Group
Condition
mRNA
_5776
mRNA
_5777
mRNA
_5778
mRNA
_5779
mRNA
_5780
14144
14145
14146
14147
14148
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.3
-1.5
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-0.1
-0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.2
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.3
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.1
-0.4
N.D.
N.D.
growth on ypd
YPD
+0.2
-0.2
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.2
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
-0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.3
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.2
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.5
-0.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
+0.2
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.5
+0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
+0.3
+0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.6
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.3
+0.2
N.D.
N.D.
auxotrophy
Dropout Complete
-0.1
+0.4
+0.8
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.4
+0.3
+0.4
N.D.
N.D.
auxotrophy
YNB Glucose
+0.1
+0.5
+0.6
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.3
+0.7
N.D.
N.D.
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