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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14146 and 14147 are separated by 473 nucleotides
14147 and 14148 are separated by 306 nucleotides
14148 and 14149 are separated by 598 nucleotides
14149 and 14150 are separated by 613 nucleotides
mRNA_5778: 14146 - HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Transcription factor PAP1-PF08601,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF111430,SUPERFAMILY--SSF57959, at 923,190 to 924,639
14146
mRNA_5779: 14147 - K14848 RRB1, GRWD1 ribosome assembly protein RRB1, at 925,113 to 926,759
14147
mRNA_5780: 14148 - KOG2989 Uncharacterized conserved protein, at 927,066 to 928,208
14148
mRNA_5781: 14149 - HMMPfam-Protein of unknown function (DUF3533)-PF12051, at 928,807 to 930,630
14149
mRNA_5782: 14150 - HMMPfam-Protein of unknown function (DUF3533)-PF12051, at 931,244 to 933,171
14150
Group
Condition
mRNA
_5778
mRNA
_5779
mRNA
_5780
mRNA
_5781
mRNA
_5782
14146
14147
14148
14149
14150
ypd buoyancy
40 hrs No Buoyancy Separation
-1.5
N.D.
N.D.
+0.4
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
N.D.
-0.2
-1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
N.D.
N.D.
+0.1
-1.3
growth on ypd
YPD
-0.2
N.D.
N.D.
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
N.D.
-0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
N.D.
N.D.
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
N.D.
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
N.D.
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
N.D.
+0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
N.D.
-0.0
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
N.D.
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
N.D.
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
N.D.
+0.3
-0.1
growth on oleic acid
YNB Glucose
+0.4
N.D.
N.D.
-0.0
+0.2
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
N.D.
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
N.D.
+0.3
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
N.D.
+0.3
+0.5
growth on ricinoleic acid
YNB Glucose
+0.3
N.D.
N.D.
+0.3
+0.1
auxotrophy
YNB Glucose
+0.6
N.D.
N.D.
+0.1
+0.0
auxotrophy
Dropout Complete
+0.8
N.D.
N.D.
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
N.D.
N.D.
+0.3
+0.1
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