Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 14146 and 14147 are separated by 473 nucleotides14147 and 14148 are separated by 306 nucleotides14148 and 14149 are separated by 598 nucleotides14149 and 14150 are separated by 613 nucleotides mRNA_5778: 14146 - HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Transcription factor PAP1-PF08601,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF111430,SUPERFAMILY--SSF57959, at 923,190 to 924,639 14146 mRNA_5779: 14147 - K14848 RRB1, GRWD1 ribosome assembly protein RRB1, at 925,113 to 926,759 14147 mRNA_5780: 14148 - KOG2989 Uncharacterized conserved protein, at 927,066 to 928,208 14148 mRNA_5781: 14149 - HMMPfam-Protein of unknown function (DUF3533)-PF12051, at 928,807 to 930,630 14149 mRNA_5782: 14150 - HMMPfam-Protein of unknown function (DUF3533)-PF12051, at 931,244 to 933,171 14150
Group Condition mRNA_5778 mRNA_5779 mRNA_5780 mRNA_5781 mRNA_5782
14146 14147 14148 14149 14150
ypd buoyancy 40 hrs No Buoyancy Separation -1.5 N.D. N.D. +0.4 -0.3
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 N.D. N.D. -0.2 -1.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.4 N.D. N.D. +0.1 -1.3
growth on ypd YPD -0.2 N.D. N.D. -0.0 -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 N.D. N.D. -0.1 -0.2
facs on lipid accumulation Sorted High BODIPY Gate -0.4 N.D. N.D. +0.1 +0.1
ypd buoyancy 40 hrs Median Buoyancy -0.1 N.D. N.D. -0.2 +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 N.D. N.D. +0.2 -0.3
auxotrophy YNB Glucose 75mM Arginine -0.1 N.D. N.D. +0.1 -0.0
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 N.D. N.D. -0.0 +0.3
ypd buoyancy 40 hrs High Buoyancy -0.0 N.D. N.D. +0.1 +0.1
ypd buoyancy 40 hrs Low Buoyancy -0.2 N.D. N.D. +0.1 +0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.2 N.D. N.D. +0.3 -0.1
growth on oleic acid YNB Glucose +0.4 N.D. N.D. -0.0 +0.2
growth on oleic acid YNB Oleic Acid +0.3 N.D. N.D. +0.1 +0.2
auxotrophy YNB Glucose 75mM Methionine +0.3 N.D. N.D. +0.3 +0.0
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 N.D. N.D. +0.3 +0.5
growth on ricinoleic acid YNB Glucose +0.3 N.D. N.D. +0.3 +0.1
auxotrophy YNB Glucose +0.6 N.D. N.D. +0.1 +0.0
auxotrophy Dropout Complete +0.8 N.D. N.D. +0.2 +0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.7 N.D. N.D. +0.3 +0.1
remove
mRNA_5778
plot
remove
mRNA_5779
plot
remove
mRNA_5780
remove
mRNA_5781
plot
remove
mRNA_5782
plot