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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14148 and 14149 are separated by 598 nucleotides
14149 and 14150 are separated by 613 nucleotides
14150 and 14151 are separated by 202 nucleotides
14151 and 14152 overlap by 2 nucleotides
mRNA_5780: 14148 - KOG2989 Uncharacterized conserved protein, at 927,066 to 928,208
14148
mRNA_5781: 14149 - HMMPfam-Protein of unknown function (DUF3533)-PF12051, at 928,807 to 930,630
14149
mRNA_5782: 14150 - HMMPfam-Protein of unknown function (DUF3533)-PF12051, at 931,244 to 933,171
14150
mRNA_5783: 14151 - KOG4623 Uncharacterized conserved protein, at 933,374 to 935,462
14151
mRNA_5784: 14152 - Hypothetical Protein, at 935,461 to 936,039
14152
Group
Condition
mRNA
_5780
mRNA
_5781
mRNA
_5782
mRNA
_5783
mRNA
_5784
14148
14149
14150
14151
14152
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
-1.3
-0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
-1.0
+0.1
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
+0.1
-0.2
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
-0.1
-0.4
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
+0.1
+0.2
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
-0.2
-0.3
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.0
-0.2
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
+0.1
-0.3
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
-0.3
-0.3
+0.2
growth on ypd
YPD
N.D.
-0.0
-0.1
+0.4
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.0
+0.3
-0.1
-0.1
auxotrophy
YNB Glucose
N.D.
+0.1
+0.0
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.2
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
+0.0
-0.1
-0.1
growth on oleic acid
YNB Glucose
N.D.
-0.0
+0.2
+0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
+0.1
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.2
-0.3
+0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.1
+0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.4
-0.3
+1.0
-0.5
auxotrophy
Dropout Complete
N.D.
+0.2
+0.1
-0.2
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
+0.5
-0.1
-0.0
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