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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14151 and 14152 overlap by 2 nucleotides
14152 and 14153 are separated by 1172 nucleotides
14153 and 14154 are separated by 470 nucleotides
14154 and 14155 are separated by 401 nucleotides
mRNA_5783: 14151 - KOG4623 Uncharacterized conserved protein, at 933,374 to 935,462
14151
mRNA_5784: 14152 - Hypothetical Protein, at 935,461 to 936,039
14152
mRNA_5785: 14153 - K14758 HRR25 casein kinase I homolog HRR25, at 937,212 to 938,671
14153
mRNA_5786: 14154 - Hypothetical Protein, at 939,142 to 939,826
14154
mRNA_5787: 14155 - Hypothetical Protein, at 940,228 to 943,427
14155
Group
Condition
mRNA
_5783
mRNA
_5784
mRNA
_5785
mRNA
_5786
mRNA
_5787
14151
14152
14153
14154
14155
growth on ricinoleic acid
YNB Glucose
-0.3
-0.5
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.2
N.D.
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.5
N.D.
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.2
N.D.
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.5
N.D.
N.D.
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
N.D.
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose
-0.2
+0.1
N.D.
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.0
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.2
N.D.
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.2
N.D.
N.D.
+0.2
growth on ypd
YPD
+0.4
-0.3
N.D.
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.1
N.D.
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.2
N.D.
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
-0.3
+0.6
N.D.
N.D.
-0.1
growth on oleic acid
YNB Glucose
+0.0
+0.1
N.D.
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
N.D.
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
N.D.
N.D.
+0.2
auxotrophy
Dropout Complete
-0.2
+0.6
N.D.
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.4
N.D.
N.D.
+0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+1.0
-0.5
N.D.
N.D.
+0.0
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