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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14154 and 14155 are separated by 401 nucleotides
14155 and 14156 are separated by 157 nucleotides
14156 and 14157 are separated by 89 nucleotides
14157 and 14158 are separated by 96 nucleotides
mRNA_5786: 14154 - Hypothetical Protein, at 939,142 to 939,826
14154
mRNA_5787: 14155 - Hypothetical Protein, at 940,228 to 943,427
14155
mRNA_5788: 14156 - HMMPfam-Ribosome biogenesis protein SLX9-PF15341, at 943,585 to 944,558
14156
mRNA_5789: 14157 - KOG2859 DNA repair protein, member of the recA/RAD51 family, at 944,648 to 945,829
14157
mRNA_5790: 14158 - K01054 MGLL acylglycerol lipase, at 945,926 to 947,446
14158
Group
Condition
mRNA
_5786
mRNA
_5787
mRNA
_5788
mRNA
_5789
mRNA
_5790
14154
14155
14156
14157
14158
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
N.D.
-0.3
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
N.D.
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
N.D.
-0.2
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.0
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.3
N.D.
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
N.D.
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
N.D.
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
N.D.
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
N.D.
-0.2
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
N.D.
+0.1
-0.1
growth on ypd
YPD
N.D.
-0.1
N.D.
-0.0
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.0
N.D.
-0.2
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
N.D.
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.4
N.D.
+0.1
-0.1
auxotrophy
Dropout Complete
N.D.
+0.1
N.D.
+0.4
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
N.D.
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
N.D.
+0.5
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.4
N.D.
+0.2
+0.0
auxotrophy
YNB Glucose
N.D.
+0.1
N.D.
+0.6
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.7
N.D.
-0.2
+0.2
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