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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14157 and 14158 are separated by 96 nucleotides
14158 and 14159 are separated by 552 nucleotides
14159 and 14160 are separated by 256 nucleotides
14160 and 14161 are separated by 174 nucleotides
mRNA_5789: 14157 - KOG2859 DNA repair protein, member of the recA/RAD51 family, at 944,648 to 945,829
14157
mRNA_5790: 14158 - K01054 MGLL acylglycerol lipase, at 945,926 to 947,446
14158
mRNA_5791: 14159 - K15115 SLC25A32, MFT solute carrier family 25 (mitochondrial folate transporter), member 32, at 947,999 to 949,301
14159
mRNA_5792: 14160 - K10755 RFC2_4 replication factor C subunit 2/4, at 949,558 to 951,302
14160
mRNA_5793: 14161 - K10581 UBE2O ubiquitin-conjugating enzyme E2 O, at 951,477 to 955,108
14161
Group
Condition
mRNA
_5789
mRNA
_5790
mRNA
_5791
mRNA
_5792
mRNA
_5793
14157
14158
14159
14160
14161
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
N.D.
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.2
N.D.
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.0
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.0
N.D.
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.1
N.D.
N.D.
+0.0
growth on oleic acid
YNB Glucose
-0.1
-0.1
N.D.
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.1
N.D.
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.0
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
N.D.
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.1
N.D.
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.2
N.D.
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.0
N.D.
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
N.D.
N.D.
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
N.D.
N.D.
+0.1
growth on ypd
YPD
-0.0
+0.2
N.D.
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.0
N.D.
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.3
N.D.
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.1
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.0
N.D.
N.D.
+0.1
auxotrophy
Dropout Complete
+0.4
-0.0
N.D.
N.D.
+0.2
auxotrophy
YNB Glucose
+0.6
+0.0
N.D.
N.D.
+0.1
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