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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14161 and 14162 are separated by 364 nucleotides
14162 and 14163 are separated by 295 nucleotides
14163 and 14164 overlap by 20 nucleotides
14164 and 14165 are separated by 1613 nucleotides
mRNA_5793: 14161 - K10581 UBE2O ubiquitin-conjugating enzyme E2 O, at 951,477 to 955,108
14161
mRNA_5794: 14162 - K01637 E4.1.3.1, aceA isocitrate lyase, at 955,473 to 957,559
14162
mRNA_5795: 14163 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 957,855 to 959,394
14163
mRNA_5796: 14164 - BLAST Protein of unknown function DUF4598 [Xanthophyllomyce..., at 959,375 to 960,569
14164
mRNA_5797: 14165 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 962,183 to 965,371
14165
Group
Condition
mRNA
_5793
mRNA
_5794
mRNA
_5795
mRNA
_5796
mRNA
_5797
14161
14162
14163
14164
14165
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.7
-0.4
-0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-1.0
-0.4
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.3
-0.6
-0.0
-0.1
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.4
-0.3
-0.4
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.1
+0.2
-0.4
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.3
+0.1
-0.1
-0.1
auxotrophy
Dropout Complete
+0.2
+0.3
-0.5
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-1.1
-0.0
+0.4
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
-0.1
-0.1
-0.2
growth on oleic acid
YNB Glucose
+0.2
-0.1
-0.2
-0.1
+0.2
auxotrophy
YNB Glucose
+0.1
+0.3
-0.5
+0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
-0.0
-0.0
-0.1
growth on ypd
YPD
+0.1
-0.1
+0.2
+0.2
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
-0.3
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.1
-0.0
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.4
-0.2
+0.0
+0.8
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.4
-0.2
+0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.6
+0.5
+0.3
+0.4
growth on ricinoleic acid
YNB Glucose
+0.2
+0.1
+0.1
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.3
-0.3
+0.2
+0.9
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.9
+0.0
-0.4
+0.5
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