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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14162 and 14163 are separated by 295 nucleotides
14163 and 14164 overlap by 20 nucleotides
14164 and 14165 are separated by 1613 nucleotides
14165 and 14166 are separated by 256 nucleotides
mRNA_5794: 14162 - K01637 E4.1.3.1, aceA isocitrate lyase, at 955,473 to 957,559
14162
mRNA_5795: 14163 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 957,855 to 959,394
14163
mRNA_5796: 14164 - BLAST Protein of unknown function DUF4598 [Xanthophyllomyce..., at 959,375 to 960,569
14164
mRNA_5797: 14165 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 962,183 to 965,371
14165
mRNA_5798: 14166 - KOG3433 Protein involved in meiotic recombination/predicted coiled-coil protein, at 965,628 to 966,973
14166
Group
Condition
mRNA
_5794
mRNA
_5795
mRNA
_5796
mRNA
_5797
mRNA
_5798
14162
14163
14164
14165
14166
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
-0.4
+0.1
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.7
-0.4
-0.1
+0.0
+0.2
growth on oleic acid
YNB Oleic Acid
-0.6
-0.0
-0.1
-0.4
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
-0.4
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
-0.1
-0.2
-0.2
growth on oleic acid
YNB Glucose
-0.1
-0.2
-0.1
+0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.3
-0.4
+0.5
+0.4
growth on ypd
YPD
-0.1
+0.2
+0.2
-0.4
-0.0
auxotrophy
YNB Glucose
+0.3
-0.5
+0.2
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
-0.0
-0.1
+0.1
auxotrophy
Dropout Complete
+0.3
-0.5
-0.1
-0.1
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.2
+0.0
+0.8
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.0
+0.2
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.1
-0.1
-0.1
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.1
-0.0
+0.4
+0.4
+0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.3
+0.4
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.2
+0.3
-0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.9
+0.0
-0.4
+0.5
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
+0.5
+0.3
+0.4
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.3
+0.2
+0.9
-0.0
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
+0.2
+0.3
+0.4
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