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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
14163 and 14164 overlap by 20 nucleotides
14164 and 14165 are separated by 1613 nucleotides
14165 and 14166 are separated by 256 nucleotides
14166 and 14167 are separated by 216 nucleotides
mRNA_5795: 14163 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 957,855 to 959,394
14163
mRNA_5796: 14164 - BLAST Protein of unknown function DUF4598 [Xanthophyllomyce..., at 959,375 to 960,569
14164
mRNA_5797: 14165 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 962,183 to 965,371
14165
mRNA_5798: 14166 - KOG3433 Protein involved in meiotic recombination/predicted coiled-coil protein, at 965,628 to 966,973
14166
mRNA_5799: 14167 - K09540 SEC63, DNAJC23 translocation protein SEC63, at 967,190 to 969,688
14167
Group
Condition
mRNA
_5795
mRNA
_5796
mRNA
_5797
mRNA
_5798
mRNA
_5799
14163
14164
14165
14166
14167
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
-0.2
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.4
-0.1
-0.0
N.D.
auxotrophy
YNB Glucose
-0.5
+0.2
-0.1
+0.1
N.D.
auxotrophy
Dropout Complete
-0.5
-0.1
-0.1
+0.5
N.D.
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
-0.4
+0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.1
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.1
+0.0
+0.2
N.D.
growth on oleic acid
YNB Glucose
-0.2
-0.1
+0.2
-0.1
N.D.
growth on ypd
YPD
+0.2
+0.2
-0.4
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
-0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.2
-0.0
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.4
+0.5
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.4
+0.5
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.3
-0.1
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.0
+0.8
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.4
+0.1
+0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
-0.1
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.2
+0.9
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
+0.3
+0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.4
+0.4
+0.5
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.3
+0.4
+0.3
N.D.
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