Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 14163 and 14164 overlap by 20 nucleotides14164 and 14165 are separated by 1613 nucleotides14165 and 14166 are separated by 256 nucleotides14166 and 14167 are separated by 216 nucleotides mRNA_5795: 14163 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 957,855 to 959,394 14163 mRNA_5796: 14164 - BLAST Protein of unknown function DUF4598 [Xanthophyllomyce..., at 959,375 to 960,569 14164 mRNA_5797: 14165 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 962,183 to 965,371 14165 mRNA_5798: 14166 - KOG3433 Protein involved in meiotic recombination/predicted coiled-coil protein, at 965,628 to 966,973 14166 mRNA_5799: 14167 - K09540 SEC63, DNAJC23 translocation protein SEC63, at 967,190 to 969,688 14167
Group Condition mRNA_5795 mRNA_5796 mRNA_5797 mRNA_5798 mRNA_5799
14163 14164 14165 14166 14167
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 -0.1 -0.2 -0.2 N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.2 -0.4 -0.1 -0.0 N.D.
auxotrophy YNB Glucose -0.5 +0.2 -0.1 +0.1 N.D.
auxotrophy Dropout Complete -0.5 -0.1 -0.1 +0.5 N.D.
growth on oleic acid YNB Oleic Acid -0.0 -0.1 -0.4 +0.2 N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.4 +0.1 +0.1 -0.1 N.D.
ypd buoyancy 40 hrs Low Buoyancy -0.4 -0.1 +0.0 +0.2 N.D.
growth on oleic acid YNB Glucose -0.2 -0.1 +0.2 -0.1 N.D.
growth on ypd YPD +0.2 +0.2 -0.4 -0.0 N.D.
ypd buoyancy 40 hrs Median Buoyancy -0.0 -0.0 -0.1 +0.1 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.0 +0.2 -0.0 -0.1 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate +0.0 -0.4 +0.5 -0.1 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation -0.3 -0.4 +0.5 +0.4 N.D.
auxotrophy YNB Glucose 75mM Arginine -0.2 +0.3 -0.1 +0.3 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 +0.0 +0.8 -0.2 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.3 +0.4 +0.1 +0.3 N.D.
ypd buoyancy 40 hrs High Buoyancy +0.1 -0.1 -0.1 +0.6 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3 +0.2 +0.9 -0.0 N.D.
growth on ricinoleic acid YNB Glucose +0.1 +0.2 +0.3 +0.4 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid -0.0 +0.4 +0.4 +0.5 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.5 +0.3 +0.4 +0.3 N.D.
remove
mRNA_5795
plot
remove
mRNA_5796
plot
remove
mRNA_5797
remove
mRNA_5798
plot
remove
mRNA_5799
plot